View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9711_low_2 (Length: 651)
Name: NF9711_low_2
Description: NF9711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9711_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 576; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 18 - 640
Target Start/End: Complemental strand, 51109341 - 51108729
Alignment:
| Q |
18 |
actaatgtgtatttttagaagttgcacaactaactaataaacaaacaccaaacctcagttacggttaattcaaccgttgaggttatgtcatttctgcatc |
117 |
Q |
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| T |
51109341 |
actaatgtgtatttttagaagttgcacaactaactaataaacaaacaccaaacctcagttacggttaattcaaccgttgaggttatgtcatttctgcatc |
51109242 |
T |
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| Q |
118 |
gaatcggaaactttaggctgaataccgagaggacatttcaatttcgcagatgttacactcacctgcttcatgcttctttctcaaattctattcccaaacc |
217 |
Q |
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| T |
51109241 |
gaatctgaaactttaggctgaataccgagaggacatttcaatttcgcagatgttacactcacctgcttcatgcttctttctcaaattctattcccgaacc |
51109142 |
T |
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| Q |
218 |
taaaactctccctactgttatgccatattcgcattcgcttttccataatactagacccataaatgtttctccaattgttttaaacagcgtgaggtgttat |
317 |
Q |
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| T |
51109141 |
taaaactctccctactgttatgccatattcgcattcgcttttccataatactagacccataaatgtttctccaattgttttaaacagcgtgaggtgttat |
51109042 |
T |
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| Q |
318 |
gctgcacccgttcaggtaatttacaaacttctagtagttgtaactagggcttaattatgaacaaagaaaccttaatgcatgaatgttccttagaaacaat |
417 |
Q |
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| T |
51109041 |
gctgcacccgttcaggtaatttacaaacttctagtagttgtaactagggcttaattatgaacaaagaaaccttaatgcatgaatgttccttagaaac--- |
51108945 |
T |
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| Q |
418 |
ctcttttcaacactatcaaaattgtcatctttgctattgggaatatgttccatggtgattttggtattgtgacaatctgcgtctcttggttttattcatg |
517 |
Q |
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| T |
51108944 |
-------caacactatcaaaattgtcatctttgctattgggaatatgttgcatggtgattttggtattgtgacaatctgcgtctcttggttttattcatg |
51108852 |
T |
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| Q |
518 |
tcgcgcattttgtgtttgtgccttcagtaagcttgagcattatccttcacgttatgtgtttggtagctttgctatgtattggtggtgttggttgatgatg |
617 |
Q |
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| T |
51108851 |
tcgcgcattttgtgtttgtgccttcagtaagcttgagcattatccttcacgttatgtgtttggtagctttgctatgtattggtggtgttggttgatgatg |
51108752 |
T |
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| Q |
618 |
tttttctgtgttttctctttcat |
640 |
Q |
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| T |
51108751 |
tttttctgtgttttctctttcat |
51108729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 203 - 288
Target Start/End: Complemental strand, 51116719 - 51116634
Alignment:
| Q |
203 |
ttctattcccaaacctaaaactctccctactgttatgccatattcgcattcgcttttccataatactagacccataaatgtttctc |
288 |
Q |
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| T |
51116719 |
ttctactcccaagcctaaaactctccctacggttatgccatattcacattcgcttttccatagtactagacccataaatgtttctc |
51116634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 68 - 96
Target Start/End: Complemental strand, 51103850 - 51103822
Alignment:
| Q |
68 |
aacctcagttacggttaattcaaccgttg |
96 |
Q |
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| T |
51103850 |
aacctcagttacggttaattcaaccgttg |
51103822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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