View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9711_low_20 (Length: 382)
Name: NF9711_low_20
Description: NF9711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9711_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 20 - 367
Target Start/End: Original strand, 49701164 - 49701511
Alignment:
| Q |
20 |
cttttgttaagtaatgtggcaaattaatttgagtttcaagaatgnnnnnnnntaattgtcaggagagttttatcccatccattgacttgagttagtcata |
119 |
Q |
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| T |
49701164 |
cttttgttaagtaatgtggcaaattaatttgagtttcaagaatgaaaaaaaataattgtcaggagagttttatcccatccattgacttgagttagtcata |
49701263 |
T |
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| Q |
120 |
attcgacgtgatatttgaacattgaggataacaacataagaaaggagtcatgttgcaagtgaagttaagtaatttaaaaatctgcattttattgtggctg |
219 |
Q |
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| T |
49701264 |
attcgacgtgatatttgaacattgaggataacaacataagaaaggagtcatgtttcaagtgaagttaagtaatttaaaaatctgcattttattgtggctg |
49701363 |
T |
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| Q |
220 |
tgtttaattttcctttgaacgtatacacaatttgtatttctcaaatgtctttttctataatatagggggaaaatgcaaactgaaccttcctttttctttt |
319 |
Q |
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| T |
49701364 |
tgattaattttcctttgaacgtatacacaatttgtatttctcaaatgtctttttctataatatagggggaaaatgcaaactgaaccttcctttttctttt |
49701463 |
T |
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| Q |
320 |
gagtaacaggaacttatcaaacgggtgaatggagtagaacatgtaagt |
367 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49701464 |
gagttacaggaacttatcaaacgggtgaatggagtagaacatgtaagt |
49701511 |
T |
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