View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9711_low_21 (Length: 379)
Name: NF9711_low_21
Description: NF9711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9711_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 23 - 209
Target Start/End: Original strand, 21007280 - 21007469
Alignment:
| Q |
23 |
ctcccattaaactaagtaaataaagagccagaacaaggaagat---gaagagccaagttagcattagtccaccgcaaaaagtccaaacaagaaactgatg |
119 |
Q |
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| T |
21007280 |
ctcccattaaactaagtaaataaagagccagaacaaggaagatcatgaagagccaagttagcattagtccaccgcaaaaagtccaaacaagaaagtgatg |
21007379 |
T |
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| Q |
120 |
gcggagggcgacgaccacacttttgatgtgcacccaacactgcattaaaatcaccaataaacaaccctgatgagtgagatcagcccaaag |
209 |
Q |
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| T |
21007380 |
gcggagggcgacgaccacacttttgatgtgcacccaacactgcattaaaatcaccaataaacaaccctgatgagtgagatcagcccaaag |
21007469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 185
Target Start/End: Complemental strand, 14641163 - 14641106
Alignment:
| Q |
128 |
cgacgaccacacttttgatgtgcacccaacactgcattaaaatcaccaataaacaacc |
185 |
Q |
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| T |
14641163 |
cgacgaccacacttctcatgcgcacccaacactgcattaaaatccccaacaaataacc |
14641106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 185
Target Start/End: Complemental strand, 19746827 - 19746764
Alignment:
| Q |
122 |
ggagggcgacgaccacacttttgatgtgcacccaacactgcattaaaatcaccaataaacaacc |
185 |
Q |
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| T |
19746827 |
ggaggccgacaaccacgcttttcatgagcacccaacactgcattaaaatcaccaagaaataacc |
19746764 |
T |
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