View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9711_low_22 (Length: 375)

Name: NF9711_low_22
Description: NF9711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9711_low_22
NF9711_low_22
[»] chr5 (2 HSPs)
chr5 (18-364)||(16215346-16215696)
chr5 (18-319)||(16962642-16962950)
[»] chr4 (2 HSPs)
chr4 (18-145)||(48891813-48891940)
chr4 (259-295)||(18966004-18966040)
[»] chr8 (5 HSPs)
chr8 (22-162)||(24826699-24826839)
chr8 (258-295)||(30011767-30011804)
chr8 (247-295)||(39560337-39560385)
chr8 (247-300)||(1319265-1319318)
chr8 (256-300)||(26819285-26819329)
[»] chr6 (1 HSPs)
chr6 (256-312)||(31650294-31650350)
[»] chr7 (3 HSPs)
chr7 (218-292)||(24547703-24547777)
chr7 (256-300)||(35169976-35170020)
chr7 (256-320)||(5376291-5376355)
[»] chr3 (1 HSPs)
chr3 (247-301)||(49598433-49598487)
[»] chr2 (1 HSPs)
chr2 (255-292)||(35196105-35196142)
[»] chr1 (2 HSPs)
chr1 (256-309)||(39086030-39086083)
chr1 (256-301)||(49364412-49364457)


Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 18 - 364
Target Start/End: Complemental strand, 16215696 - 16215346
Alignment:
Q  18 agtaatgttcctcagctaatgaggctaactacacttggat----taccactatacaacattttctcaatagaagaaattggagatgcaaccaacaacttt 113  Q
    ||||||||||||||||||||||||||||||||||||||||    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  16215696 agtaatgttcctcagctaatgaggctaactacacttggatggattaccaccatacaacattttctcaatagaagaaattggagatgcaaccaacaacttt 16215597  T
Q  114 gatccatcaaatctaataggagaaggatcacaaggagaggtacaagaatttgagtttcatatattgtttaccattttgatactacgtcactagctataaa 213  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  16215596 gatccatcaaatctaataggagaaggatcacaaagagaggtacaagaatttgagtttcatatattgtttaccattttgatactacatcactagcaataaa 16215497  T
Q  214 aaagtttacaccgtcaataaatcatatccaacgatatatataactttagaagtagttacgattgaagtcaaacatttttaataatctgtcaattataatt 313  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||    
T  16215496 aaagtttaccccgtcaataaatcatatccaacgatatatataactttagaagtagttacgattcaagtcaaacatttttaataatctgtcaattatgatt 16215397  T
Q  314 cattgaaggaaatggggcccacaagaatgaatttgtaatggcattgtctct 364  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  16215396 cattgaaggaaatggggcccacaagactgaatttgtaatggcattgtctct 16215346  T

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Target: chr5; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 319
Target Start/End: Complemental strand, 16962950 - 16962642
Alignment:
Q  18 agtaatgttcctcagctaatgaggctaactacacttggattaccactatacaacattttctcaatagaagaaattggagatgcaaccaacaactttgatc 117  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  16962950 agtaatgttccccagctaatgaggctaactacacttggattaccaccatacaacattttcacaatagaagaaattggagatgcaaccaacaactttgatc 16962851  T
Q  118 catcaaatctaataggagaaggatcacaaggagaggtacaagaatttgagtttcatat-------attgtttaccattttgatactacgtcactagctat 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||  |||||||||||||||||| ||||||||||||    
T  16962850 catcaaatctaataggagaaggatcacaaggagaggtacaagaatttgagtttcatatctaacaaatattttaccattttgatactatgtcactagctat 16962751  T
Q  211 aaaaaagtttacaccgtcaataaatcatatccaacgatatatataactttagaagtagttacgattgaagtcaaacatttttaataatctgtcaattata 310  Q
    |||||||||||||||||| |||||||||||||||  ||||||||||||||| ||||||||||||||||||||||   |||||||||||||||||||||||    
T  16962750 aaaaaagtttacaccgtcgataaatcatatccaataatatatataactttataagtagttacgattgaagtcaattgtttttaataatctgtcaattata 16962651  T
Q  311 attcattga 319  Q
    |||||||||    
T  16962650 attcattga 16962642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 18 - 145
Target Start/End: Complemental strand, 48891940 - 48891813
Alignment:
Q  18 agtaatgttcctcagctaatgaggctaactacacttggattaccactatacaacattttctcaatagaagaaattggagatgcaaccaacaactttgatc 117  Q
    |||| |||||||| ||||||||||||| || |||||||||||||||  |||| ||||||| ||||||||||||| | ||||||||||||||||||| |||    
T  48891940 agtattgttcctcggctaatgaggctagctgcacttggattaccaccttacagcattttcacaatagaagaaatcgaagatgcaaccaacaactttcatc 48891841  T
Q  118 catcaaatctaataggagaaggatcaca 145  Q
    ||||||| |||||||||||||| |||||    
T  48891840 catcaaacctaataggagaagggtcaca 48891813  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 295
Target Start/End: Original strand, 18966004 - 18966040
Alignment:
Q  259 ttagaagtagttacgattgaagtcaaacatttttaat 295  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  18966004 ttagaattagttacgattaaagtcaaacatttttaat 18966040  T

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Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 22 - 162
Target Start/End: Original strand, 24826699 - 24826839
Alignment:
Q  22 atgttcctcagctaatgaggctaactacacttggattaccactatacaacattttctcaatagaagaaattggagatgcaaccaacaactttgatccatc 121  Q
    ||||||||||   |||||| ||| |||||| ||||   |||| |||||| |||||| ||  ||||||||||| |||||||||||| |||||||| | |||    
T  24826699 atgttcctcaaacaatgagactagctacacatggacagccaccatacaatattttcacagaagaagaaattgaagatgcaaccaataactttgaccaatc 24826798  T
Q  122 aaatctaataggagaaggatcacaaggagaggtacaagaat 162  Q
    |||| ||||||||||||||||||||||| ||||| ||||||    
T  24826799 aaatttaataggagaaggatcacaaggacaggtaaaagaat 24826839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 258 - 295
Target Start/End: Original strand, 30011767 - 30011804
Alignment:
Q  258 tttagaagtagttacgattgaagtcaaacatttttaat 295  Q
    |||||||||||||| |||||||||||||||||||||||    
T  30011767 tttagaagtagttatgattgaagtcaaacatttttaat 30011804  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 295
Target Start/End: Original strand, 39560337 - 39560385
Alignment:
Q  247 atatatataactttagaagtagttacgattgaagtcaaacatttttaat 295  Q
    |||| ||| |||||||||||||||| |||| ||||||||||||||||||    
T  39560337 atatgtatgactttagaagtagttatgattaaagtcaaacatttttaat 39560385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 300
Target Start/End: Original strand, 1319265 - 1319318
Alignment:
Q  247 atatatataactttagaagtagttacgattgaagtcaaacatttttaataatct 300  Q
    |||||| ||| ||||||||||  || |||||||||| |||||||||||||||||    
T  1319265 atatatgtaattttagaagtaactatgattgaagtccaacatttttaataatct 1319318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 300
Target Start/End: Complemental strand, 26819329 - 26819285
Alignment:
Q  256 actttagaagtagttacgattgaagtcaaacatttttaataatct 300  Q
    ||||||||||||||| ||||  |||||||||||||||||| ||||    
T  26819329 actttagaagtagttgcgataaaagtcaaacatttttaatgatct 26819285  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 256 - 312
Target Start/End: Complemental strand, 31650350 - 31650294
Alignment:
Q  256 actttagaagtagttacgattgaagtcaaacatttttaataatctgtcaattataat 312  Q
    |||||||||||||||| |||| |||||||||||||||||| ||| | ||||||||||    
T  31650350 actttagaagtagttatgattaaagtcaaacatttttaatgatccgacaattataat 31650294  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 292
Target Start/End: Original strand, 24547703 - 24547777
Alignment:
Q  218 tttacaccgtcaataaatcatatccaacgatatatataactttagaagtagttacgattgaagtcaaacattttt 292  Q
    ||||||| |||||||||||| | ||||  |||| | | | |||||||||||||| ||||||||||||||||||||    
T  24547703 tttacactgtcaataaatcacaaccaatcatatctgtgattttagaagtagttatgattgaagtcaaacattttt 24547777  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 300
Target Start/End: Complemental strand, 35170020 - 35169976
Alignment:
Q  256 actttagaagtagttacgattgaagtcaaacatttttaataatct 300  Q
    |||||||||||||||| |||| ||||||||||| |||||||||||    
T  35170020 actttagaagtagttatgattaaagtcaaacatctttaataatct 35169976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 320
Target Start/End: Complemental strand, 5376355 - 5376291
Alignment:
Q  256 actttagaagtagttacgattgaagtcaaacatttttaataatctgtcaattataattcattgaa 320  Q
    |||||||||||||||| ||||  |||||||| |||||||| ||||| | || || ||||||||||    
T  5376355 actttagaagtagttatgattacagtcaaacgtttttaatgatctgacgatcatgattcattgaa 5376291  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 301
Target Start/End: Complemental strand, 49598487 - 49598433
Alignment:
Q  247 atatatataactttagaagtagttacgattgaagtcaaacatttttaataatctg 301  Q
    |||||| | |||||| ||||||||||||||||||| ||| |||||||||||||||    
T  49598487 atatatgtgactttaaaagtagttacgattgaagttaaagatttttaataatctg 49598433  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 292
Target Start/End: Original strand, 35196105 - 35196142
Alignment:
Q  255 aactttagaagtagttacgattgaagtcaaacattttt 292  Q
    ||||||||||||| ||| ||||||||||||||||||||    
T  35196105 aactttagaagtaattatgattgaagtcaaacattttt 35196142  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 309
Target Start/End: Complemental strand, 39086083 - 39086030
Alignment:
Q  256 actttagaagtagttacgattgaagtcaaacatttttaataatctgtcaattat 309  Q
    |||||||||||| |||  ||||||| ||||||||||||||||| || |||||||    
T  39086083 actttagaagtaattataattgaagacaaacatttttaataatttgacaattat 39086030  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 301
Target Start/End: Complemental strand, 49364457 - 49364412
Alignment:
Q  256 actttagaagtagttacgattgaagtcaaacatttttaataatctg 301  Q
    ||||||||| || |||||||| ||||||||| ||||||||||||||    
T  49364457 actttagaaataattacgattaaagtcaaacctttttaataatctg 49364412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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