View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9711_low_23 (Length: 362)
Name: NF9711_low_23
Description: NF9711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9711_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 25565576 - 25565932
Alignment:
| Q |
1 |
actggaaaacattttagtcacatatagtcaactttgcaaattttgctgcctaattttagtagataaatattaaagatgacgcaactgcatggaatgtgaa |
100 |
Q |
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| T |
25565576 |
actggaaaacattttagtcacatatagtcaacttttcaaattttgctgcctaattttagtagataaatattaaagatgacgcaactgcacggaatgtgaa |
25565675 |
T |
|
| Q |
101 |
tgtattctgagcaatatagtgacattaatctcaggtaaggcatagaaagggaactatgtaatctcaccatacattttcaagctctttctcacaagttcca |
200 |
Q |
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| T |
25565676 |
tgcattctgagcaatacagagacattaatcataggtaaggcatagaaagggaactatgtaatctcaccatacattttcaagctctttctcacaagttcca |
25565775 |
T |
|
| Q |
201 |
tcacataattttggtttttcttctggtggtaaaccagctccattggcagcatcaaatgaatggatgaagagtgtagagactcctaatgctaatccaagaa |
300 |
Q |
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| T |
25565776 |
tcacataattttggtttttcttctggtggtaaaccagctccattggcagcatcaaatgaatggatgaagagtgtagagactcctaatgctaatccaagaa |
25565875 |
T |
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| Q |
301 |
agtctctacgtgaattggtattaaaaatatcattagcagtgcattcccttgtctctg |
357 |
Q |
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| T |
25565876 |
agtctctacgtgaattggtattaaaaatatcattagcagtgcattcccttgtctctg |
25565932 |
T |
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