View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9711_low_24 (Length: 361)
Name: NF9711_low_24
Description: NF9711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9711_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 9 - 346
Target Start/End: Complemental strand, 349998 - 349661
Alignment:
| Q |
9 |
agcacagagaaaggcgaacacaaattccgggcaattagggagaagtaccatgatgacatccccctgttggatgccaagtttgttgagaccggaggcgact |
108 |
Q |
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| T |
349998 |
agcaccgagaaaggcgaacacaaattccgggcaattagggagaagaaccatgatgacatccccctgttggatgccaagtttgttgagaccggaggcgact |
349899 |
T |
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| Q |
109 |
ttttgcgcggtgagttcgacatcatagtaggtgtaaatttcaccagttggtgcattgatgaggcaaggacgtgaaccatattttgatagattttcaaagc |
208 |
Q |
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| T |
349898 |
ttttgcgcggtgagttggacatcatagtaggtgtaaatttcagcagttggagcattgatgaggcaaggacgtgaaccatattttgatagattttcaaagc |
349799 |
T |
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| Q |
209 |
aatatgaatgaagaggaaggtgtttgggaatgtaaatatcaggaagcttagacttgaaaatgaactcttgttccattgtttggatagtcattagaatgtt |
308 |
Q |
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| T |
349798 |
aatatgaatgaagaggaaggtgtttgggaatgtaaatatcaggaagcttagacttgaaaatcaactcttgttccattgtttggatagtcattagaatgtt |
349699 |
T |
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| Q |
309 |
attgtttgcttaaagagaatgaatattgttgttgattt |
346 |
Q |
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| T |
349698 |
attgtttgcttaaagagaatgaatattgttgatgattt |
349661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 221
Target Start/End: Complemental strand, 45521120 - 45521059
Alignment:
| Q |
160 |
gcattgatgaggcaaggacgtgaaccatattttgatagattttcaaagcaatatgaatgaag |
221 |
Q |
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| T |
45521120 |
gcattgatgagacatggacgtgaaccgaattgggagagattttcaaaacaatatgaatgaag |
45521059 |
T |
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