View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9711_low_25 (Length: 361)
Name: NF9711_low_25
Description: NF9711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9711_low_25 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 48 - 348
Target Start/End: Complemental strand, 43315777 - 43315476
Alignment:
| Q |
48 |
ttgtatggctaaataggatggattgaagggggtgctcattattgttatttactacgatagcctgtcattgataaatgacttctctagtagattttcgtta |
147 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43315777 |
ttgtatggctaaataggatggattgaagggggtgctcattattgttatttactacgattgcctgtcattgataaatgacttctctagtagattttcgtta |
43315678 |
T |
|
| Q |
148 |
tgggaaagtaattgagatgagacttaattggctgcatttatttatatacatgatgatatagcatgaatatgttactaaatagctatatttgaattgtggt |
247 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
43315677 |
tgggaaagtaattgagatgggacttaattggctgcatttatttatatacatgatgatatagcatgaatatgttactaaatagctatacttgaattgtggt |
43315578 |
T |
|
| Q |
248 |
gtgagttcacaac-nnnnnnnnnccatagaaatcattcaaatcaaaacnnnnnnncattccttttccatcttccagtgtgaggaattttttctttagatt |
346 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
43315577 |
gtgagttcacaacttttttttttccatagaaatcattcaaatcaaaactttttttcattccttttccatcttcaagtgtgaggaattttttctttagatt |
43315478 |
T |
|
| Q |
347 |
ct |
348 |
Q |
| |
|
|| |
|
|
| T |
43315477 |
ct |
43315476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 272 - 348
Target Start/End: Complemental strand, 43321986 - 43321910
Alignment:
| Q |
272 |
atagaaatcattcaaatcaaaacnnnnnnncattccttttccatcttccagtgtgaggaattttttctttagattct |
348 |
Q |
| |
|
|||||||||| ||||||||||| |||| |||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
43321986 |
atagaaatcactcaaatcaaaaaaaaaaatcatttcttttccaccttcaagtgtgaggaattttttctttagattct |
43321910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University