View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9711_low_27 (Length: 337)
Name: NF9711_low_27
Description: NF9711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9711_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 38 - 332
Target Start/End: Complemental strand, 24837389 - 24837095
Alignment:
| Q |
38 |
ccccagcagctgaaactccaaacaggtaacagtccagcagccatacagcaacgcaggtgcaaagaagcaggacagcaatgaggctgtcatatactcctag |
137 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24837389 |
ccccagcagctgaaactccaaacaggtaacagtccagcagccatacagcagcgcaggtgcaaagaagcaggacagcaatgaggctgtcatatactcctag |
24837290 |
T |
|
| Q |
138 |
ccaaaacagcagagcagcagcataccaaagcctcaacgcccacttaaaaggcccaaaaatccaccattaccgcaccaaacacgcttgtggattccacgtc |
237 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24837289 |
ccaaaacagcagagcagcagcataccaaagcctcaacgcccacctaaaaggcccaaaaatccaccattaccgcaccaaacacgcttgtggattccacgtc |
24837190 |
T |
|
| Q |
238 |
cattcataatacaaacaaaccggcaacttcaaacgactcaaaacccacctccatgctaacaccttaatatcctccaccatgtcgtcaacaccaaa |
332 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
24837189 |
cattcataatacaaacaaaccggcaacttcaaacgactcaaaacccacctccaagctaacaccttaatatcctccaccatgtcgtcaataccaaa |
24837095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 180
Target Start/End: Complemental strand, 30871518 - 30871449
Alignment:
| Q |
111 |
agcaatgaggctgtcatatactcctagccaaaacagcagagcagcagcataccaaagcctcaacgcccac |
180 |
Q |
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||||| |||||||||||||| ||| | |||||||||| | ||||||||||| | ||||||| ||||||| |
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| T |
30871518 |
agcaacgaggctgtcatatattccctgtcaaaacagcaaaacagcagcatacaacagcctcaccgcccac |
30871449 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 44 - 332
Target Start/End: Original strand, 28110866 - 28111154
Alignment:
| Q |
44 |
cagctgaaactccaaacaggtaacagtccagcagccatacagcaacgcaggtgcaaagaagcaggacagcaatgaggctgtcatatactcctagccaaaa |
143 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28110866 |
cagctgaaactccagacaggtaacagtccagcagccatacagcagcgcaggtgcaaagaagcaggacagcaatgaggctgtcatatactcctagccaaaa |
28110965 |
T |
|
| Q |
144 |
cagcagagcagcagcataccaaagcctcaacgcccacttaaaaggcccaaaaatccaccattaccgcaccaaacacgcttgtggattccacgtccattca |
243 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28110966 |
cagcagagcagcagcataccaaagcctcaacgcccacctaaaaggcccaaaaatccaccattaccgcaccaaacacgcttgtggattccacgtccattca |
28111065 |
T |
|
| Q |
244 |
taatacaaacaaaccggcaacttcaaacgactcaaaacccacctccatgctaacaccttaatatcctccaccatgtcgtcaacaccaaa |
332 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
28111066 |
taatacaaacaaaccggcaacttcaaacgactcaaaacccacctccatgctaacaccttaatatcctccaccatgtcgtcaataccaaa |
28111154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 226 - 329
Target Start/End: Original strand, 33131359 - 33131462
Alignment:
| Q |
226 |
ggattccacgtccattcataatacaaacaaaccggcaacttcaaacgactcaaaacccacctccatgctaacaccttaatatcctccaccatgtcgtcaa |
325 |
Q |
| |
|
|||||||| |||||||| | | | |||||||||||||| ||||| |||||||| ||||||| ||| |||||||||||||| ||||||||| || |||| |
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| T |
33131359 |
ggattccatgtccattctttaaataaacaaaccggcaaattcaagcgactcaatacccaccgccaagctaacaccttaattgcctccaccacttcatcaa |
33131458 |
T |
|
| Q |
326 |
cacc |
329 |
Q |
| |
|
|||| |
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|
| T |
33131459 |
cacc |
33131462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 278 - 325
Target Start/End: Complemental strand, 15559158 - 15559111
Alignment:
| Q |
278 |
aaacccacctccatgctaacaccttaatatcctccaccatgtcgtcaa |
325 |
Q |
| |
|
||||||||||||| ||||||| |||||| ||||||||||| ||||||| |
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|
| T |
15559158 |
aaacccacctccacgctaacaacttaatgtcctccaccatctcgtcaa |
15559111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 82 - 317
Target Start/End: Complemental strand, 34326569 - 34326335
Alignment:
| Q |
82 |
acagcaacgcaggtgcaaagaagcaggacagcaatgaggctgtcatatactcctagccaaaacagcagagcagcagcataccaaagcctcaacgcccact |
181 |
Q |
| |
|
|||||| | |||||||||||||||||||||||| ||||||||||||||||||||||| ||| | |||| |||||||||||||||||| || | ||||| |
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| T |
34326569 |
acagcagcacaggtgcaaagaagcaggacagcagcgaggctgtcatatactcctagccgaaaaatcagaacagcagcataccaaagccgcagcacccacg |
34326470 |
T |
|
| Q |
182 |
taaaaggcccaaaaatccaccattaccgcaccaaacacgcttgtggattccacgtccattcataatacaaacaaaccggcaacttcaaacgactcaaaac |
281 |
Q |
| |
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||| || ||| |||| ||||||||||||||||| |||| ||||||||||||| ||||||| || ||||||||||||||||| ||||| || |||||||| |
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| T |
34326469 |
taacagaccccaaaaaccaccattaccgcaccagacactcttgtggattccaagtccatttgtagtacaaacaaaccggcaa-ttcaagcggctcaaaac |
34326371 |
T |
|
| Q |
282 |
ccacctccatgctaacaccttaatatcctccaccat |
317 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |
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| T |
34326370 |
ccacctccatgctaacaccttaatgtcctccaccat |
34326335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 121; Significance: 6e-62; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 82 - 302
Target Start/End: Complemental strand, 4028645 - 4028425
Alignment:
| Q |
82 |
acagcaacgcaggtgcaaagaagcaggacagcaatgaggctgtcatatactcctagccaaaacagcagagcagcagcataccaaagcctcaacgcccact |
181 |
Q |
| |
|
|||||| | |||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||| |||||||||||||||||| || | ||| | |
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| T |
4028645 |
acagcagcacaggtgcaaagaagcaggacagcagtgaggccgtcatatactcctagccaaaaaagcagaacagcagcataccaaagccgcagcacccgca |
4028546 |
T |
|
| Q |
182 |
taaaaggcccaaaaatccaccattaccgcaccaaacacgcttgtggattccacgtccattcataatacaaacaaaccggcaacttcaaacgactcaaaac |
281 |
Q |
| |
|
||| || ||| |||| ||||||||||||||||| |||| |||| |||||||| |||||||| || ||||||||||||||||| ||||| || |||||||| |
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| T |
4028545 |
taacagaccccaaaaaccaccattaccgcaccagacactcttgcggattccaagtccattcgtagtacaaacaaaccggcaaattcaagcggctcaaaac |
4028446 |
T |
|
| Q |
282 |
ccacctccatgctaacacctt |
302 |
Q |
| |
|
||| ||||||||||||||||| |
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|
| T |
4028445 |
ccatctccatgctaacacctt |
4028425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 148
Target Start/End: Original strand, 35052330 - 35052375
Alignment:
| Q |
103 |
agcaggacagcaatgaggctgtcatatactcctagccaaaacagca |
148 |
Q |
| |
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||||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
35052330 |
agcaggacaacaatgaggctgtcatatactcgtagccaaaacagca |
35052375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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