View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9711_low_28 (Length: 336)
Name: NF9711_low_28
Description: NF9711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9711_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 11 - 321
Target Start/End: Original strand, 31347751 - 31348060
Alignment:
| Q |
11 |
cagagagtagagactgagattaatctttgttggacacaaataggaaaatattctaagt--taaagtttttattttaagaagttaaacgcctattaaaatt |
108 |
Q |
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| T |
31347751 |
cagagagtagagactgagattaatctttgttggaca--aataggaaaatattctatgtgttaaagtttttcttttaagaagttaaacgcctactaaaatg |
31347848 |
T |
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| Q |
109 |
ggtatcggagataatcaaacatgacaccatgagagaaacatactataaggtttcaagtaaacaccaccaaatcaacccaagtaggttaattattctatac |
208 |
Q |
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| T |
31347849 |
gg-atcggagataatcaaacataacatcatgagagaaacacactataagatttcaagtaaacaccaccaaatcaacccaagtaggttaattattttatgc |
31347947 |
T |
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| Q |
209 |
gtaaaagttaaaataattaatattttacccggtaatgtatgatcattaatctttaatctttgctcctatatttacaaaatttagttattcatttataaca |
308 |
Q |
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| T |
31347948 |
gtaaaagttaaaataattaatattttacccggtaatgtatgatcattaatctttaatatttgctcctatatttacaaaatttagttattcatttataaca |
31348047 |
T |
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| Q |
309 |
aaccaagaaaaag |
321 |
Q |
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| T |
31348048 |
aaccaagaaaaag |
31348060 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 165
Target Start/End: Original strand, 47470705 - 47470766
Alignment:
| Q |
104 |
aaattggtatcggagataatcaaacatgacaccatgagagaaacatactataaggtttcaag |
165 |
Q |
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| T |
47470705 |
aaattggtatcagagagaatccaacatgaaaccttgagagaaacacactttaaggtctcaag |
47470766 |
T |
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