View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9711_low_32 (Length: 315)
Name: NF9711_low_32
Description: NF9711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9711_low_32 |
 | |
|
| [»] scaffold0179 (1 HSPs) |
| | |
|
| [»] scaffold0177 (1 HSPs) |
| | |
|
| [»] scaffold0014 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0179 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: scaffold0179
Description:
Target: scaffold0179; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 6 - 297
Target Start/End: Original strand, 1544 - 1834
Alignment:
| Q |
6 |
gtttggtgttcatgaatcttgctagtcttggagtaccatagcttagtgttagagtaattatgtttttcttttctttactatcacaattaaggataatgta |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
1544 |
gtttggtgttcatgaatcttgctagtcttggagtaccatagcttagtgttggaataattatgtttt-cttttctttactatcacagttaaggataatgta |
1642 |
T |
|
| Q |
106 |
tctttaattttggttttgcttactttctagtttagattaggtggcgtaaggcttttgtaatacttcgtgtctcgacaggtttttagtaggttgaatttgg |
205 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
1643 |
tctttaattttggttttgattactttctagtttagattaggtggcgtaaggcctatgtaatacttggtgtcttgacaggtttttagtaggttgaatttgg |
1742 |
T |
|
| Q |
206 |
tgtaannnnnnnncctcatctagctctagtgcgtcattgagttcctcatctaactcttatggttccgttgcgattcttcatacttgtatatt |
297 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1743 |
tgtaattttttttcctcatctagctctagtgcgtcattgagttcctcatctaactcttatggttccgttgcgattcttcatacttgtatatt |
1834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0177 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: scaffold0177
Description:
Target: scaffold0177; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 7 - 250
Target Start/End: Original strand, 29962 - 30204
Alignment:
| Q |
7 |
tttggtgttcatgaatcttgctagtcttggagtaccatagcttagtgttagagtaattatgtttttcttttctttactatcacaattaaggataatgtat |
106 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||||||||||| || ||||||||||||||| |||||||||||||||| | ||||||||||||| |
|
|
| T |
29962 |
tttggtgttcatgattcttgctagtctaggagtaccatagcttagtattggagtaattatgtttt-cttttctttactatcatagttaaggataatgtcc |
30060 |
T |
|
| Q |
107 |
ctttaattttggttttgcttactttctagtttagattaggtggcgtaaggcttttgtaatacttcgtgtctcgacaggtttttagtaggttgaatttggt |
206 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||| ||||| ||| |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
30061 |
ctttaattttggtttttcttactttctagtttagattaggtggcttaagggtttcataatacttggtgtctcgacaggtttttagtaggttgaatttggt |
30160 |
T |
|
| Q |
207 |
gtaannnnnnnncctcatctagctctagtgcgtcattgagttcc |
250 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||| |
|
|
| T |
30161 |
gtaattttttttcctcatctagctctagtgtctcattgagttcc |
30204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 5 - 108
Target Start/End: Complemental strand, 118618 - 118515
Alignment:
| Q |
5 |
agtttggtgttcatgaatcttgctagtcttggagtaccatagcttagtgttagagtaattatgtttttcttttctttactatcacaattaaggataatgt |
104 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||| |
|
|
| T |
118618 |
agtttggtgttcatgaatcttgctagtctaggagtaccattgcttagtgttagagtaattatgtttttcttttcgttactatcatagttaaggataatgt |
118519 |
T |
|
| Q |
105 |
atct |
108 |
Q |
| |
|
|||| |
|
|
| T |
118518 |
atct |
118515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University