View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9711_low_34 (Length: 301)
Name: NF9711_low_34
Description: NF9711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9711_low_34 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 26033490 - 26033762
Alignment:
| Q |
1 |
tttatagaacacaaaaacttttgtttcttcttcttcactaaatggaccctttttcacatctggttgcaggtgattataccatcttagacgacaactttta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26033490 |
tttatagaacacaaaaacttttgtttcttcttcttcactaaatggaccctttttcacatctggttgcaggtgattataccatcttagacgacaactttta |
26033589 |
T |
|
| Q |
101 |
ccgcaacgtaaaagccccgcatttttcgatacctcgttccaatttctggttccatggttttccacatatgcttttaatatttcatcttcttcttttgacc |
200 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26033590 |
ccgcaacgtataagcccggcatttttcgatacctcgttccaatttctggttccatggttttccacatatgcttttaatatttcatcttcttcttttgacc |
26033689 |
T |
|
| Q |
201 |
atgttccttttttagtatcggtcgatgatgatgaagacatgatgataatacgtactaatgatgataatactag |
273 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26033690 |
atgttccttttttagtatcgaccgatgatgatgaagacatgatgataatacgtactaatgatgataatactag |
26033762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 3 - 234
Target Start/End: Complemental strand, 38180764 - 38180533
Alignment:
| Q |
3 |
tatagaacacaaaaacttttgtttcttcttcttcactaaatggaccctttttcacatctggttgcaggtgattataccatcttagacgacaacttttacc |
102 |
Q |
| |
|
|||||||| |||||||||| | || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
38180764 |
tatagaactcaaaaactttagatttttcttcttcactaaatggaccctttttcacatctggttgtaggtgattataccatcttagacgacaacttttacc |
38180665 |
T |
|
| Q |
103 |
gcaacgtaaaagccccgcatttttcgatacctcgttccaatttctggttccatggttttccacatatgcttttaatatttcatcttcttcttttgaccat |
202 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38180664 |
gcaacgtataagccccgcattttttgatacctcgttccaatttctggttccatgtttttccacatatgcttttaatatttcatcttcttcttttgaccat |
38180565 |
T |
|
| Q |
203 |
gttccttttttagtatcggtcgatgatgatga |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
38180564 |
gttccttttttagtatcggtcgatgatgatga |
38180533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 3 - 234
Target Start/End: Original strand, 38190367 - 38190598
Alignment:
| Q |
3 |
tatagaacacaaaaacttttgtttcttcttcttcactaaatggaccctttttcacatctggttgcaggtgattataccatcttagacgacaacttttacc |
102 |
Q |
| |
|
|||||||| |||||||||| | || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
38190367 |
tatagaactcaaaaactttagatttttcttcttcactaaatggaccctttttcacatctggttgtaggtgattataccatcttagacgacaacttttacc |
38190466 |
T |
|
| Q |
103 |
gcaacgtaaaagccccgcatttttcgatacctcgttccaatttctggttccatggttttccacatatgcttttaatatttcatcttcttcttttgaccat |
202 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38190467 |
gcaacgtataagccccgcattttttgatacctcgttccaatttctggttccatgtttttccacatatgcttttaatatttcatcttcttcttttgaccat |
38190566 |
T |
|
| Q |
203 |
gttccttttttagtatcggtcgatgatgatga |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
38190567 |
gttccttttttagtatcggtcgatgatgatga |
38190598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 3 - 234
Target Start/End: Complemental strand, 38207988 - 38207757
Alignment:
| Q |
3 |
tatagaacacaaaaacttttgtttcttcttcttcactaaatggaccctttttcacatctggttgcaggtgattataccatcttagacgacaacttttacc |
102 |
Q |
| |
|
|||||||| |||||||||| | || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
38207988 |
tatagaactcaaaaactttagatttttcttcttcactaaatggaccctttttcacatctggttgtaggtgattataccatcttagacgacaacttttacc |
38207889 |
T |
|
| Q |
103 |
gcaacgtaaaagccccgcatttttcgatacctcgttccaatttctggttccatggttttccacatatgcttttaatatttcatcttcttcttttgaccat |
202 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38207888 |
gcaacgtataagccccgcattttttgatacctcgttccaatttctggttccatgtttttccacatatgcttttaatatttcatcttcttcttttgaccat |
38207789 |
T |
|
| Q |
203 |
gttccttttttagtatcggtcgatgatgatga |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
38207788 |
gttccttttttagtatcggtcgatgatgatga |
38207757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 3 - 234
Target Start/End: Original strand, 38217592 - 38217823
Alignment:
| Q |
3 |
tatagaacacaaaaacttttgtttcttcttcttcactaaatggaccctttttcacatctggttgcaggtgattataccatcttagacgacaacttttacc |
102 |
Q |
| |
|
|||||||| |||||||||| | || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
38217592 |
tatagaactcaaaaactttagatttttcttcttcactaaatggaccctttttcacatctggttgtaggtgattataccatcttagacgacaacttttacc |
38217691 |
T |
|
| Q |
103 |
gcaacgtaaaagccccgcatttttcgatacctcgttccaatttctggttccatggttttccacatatgcttttaatatttcatcttcttcttttgaccat |
202 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38217692 |
gcaacgtataagccccgcattttttgatacctcgttccaatttctggttccatgtttttccacatatgcttttaatatttcatcttcttcttttgaccat |
38217791 |
T |
|
| Q |
203 |
gttccttttttagtatcggtcgatgatgatga |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
38217792 |
gttccttttttagtatcggtcgatgatgatga |
38217823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 3 - 234
Target Start/End: Complemental strand, 38456124 - 38455893
Alignment:
| Q |
3 |
tatagaacacaaaaacttttgtttcttcttcttcactaaatggaccctttttcacatctggttgcaggtgattataccatcttagacgacaacttttacc |
102 |
Q |
| |
|
|||||||| |||||||||| | || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
38456124 |
tatagaactcaaaaactttagatttttcttcttcactaaatggaccctttttcacatctggttgtaggtgattataccatcttagacgacaacttttacc |
38456025 |
T |
|
| Q |
103 |
gcaacgtaaaagccccgcatttttcgatacctcgttccaatttctggttccatggttttccacatatgcttttaatatttcatcttcttcttttgaccat |
202 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38456024 |
gcaacgtataagccccgcattttttgatacctcgttccaatttctggttccatgtttttccacatatgcttttaatatttcatcttcttcttttgaccat |
38455925 |
T |
|
| Q |
203 |
gttccttttttagtatcggtcgatgatgatga |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
38455924 |
gttccttttttagtatcggtcgatgatgatga |
38455893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 24 - 251
Target Start/End: Complemental strand, 38447209 - 38446982
Alignment:
| Q |
24 |
tttcttcttcttcactaaatggaccctttttcacatctggttgcaggtgattataccatcttagacgacaacttttaccgcaacgtaaaagccccgcatt |
123 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||| | ||| |||| |||||||||||| | ||| |||||| | ||| | || ||| || | || |
|
|
| T |
38447209 |
tttcttcttctttactaaatggacccttttttacaccaggtcttaggttattataccatctaaaacggcaacttcttccgaagtgtgcaagtcctgtgtt |
38447110 |
T |
|
| Q |
124 |
tttcgatacctcgttccaatttctggttccatggttttccacatatgcttttaatatttcatcttcttcttttgaccatgttccttttttagtatcggtc |
223 |
Q |
| |
|
|| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| | |
|
|
| T |
38447109 |
ctttgatacctcgtcccaatttctggttccatgtttttccacatatgcttttaatatttcatcctcttcttttgaccattttccttttttagtatcgacc |
38447010 |
T |
|
| Q |
224 |
gatgatgatgaagacatgatgataatac |
251 |
Q |
| |
|
||||||||||||||||||||||| |||| |
|
|
| T |
38447009 |
gatgatgatgaagacatgatgatgatac |
38446982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 17 - 213
Target Start/End: Original strand, 53351909 - 53352110
Alignment:
| Q |
17 |
acttttgtttcttcttcttcactaaatggaccctttttcacatctggttgcaggtgattataccatcttagacgacaacttttaccgcaacgtaaaagcc |
116 |
Q |
| |
|
||||| |||| ||||||||||||||| || ||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
53351909 |
actttggttttttcttcttcactaaacggccccttcttcacatctggtcgaaggtgattataccatcttagacgacaacttttaccgcaacgtataagcc |
53352008 |
T |
|
| Q |
117 |
ccgcatttttcgatacctcg-----ttccaatttctggttccatggttttccacatatgcttttaatatttcatcttcttcttttgaccatgttcctttt |
211 |
Q |
| |
|
|||||||| | ||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||| |||||||| |
|
|
| T |
53352009 |
ccgcatttcttgatacctcgttccattccaatttctggttccatgtttttccacatatgcttttaacatttcatcctcttcttttgaccattttcctttt |
53352108 |
T |
|
| Q |
212 |
tt |
213 |
Q |
| |
|
|| |
|
|
| T |
53352109 |
tt |
53352110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 128 - 202
Target Start/End: Complemental strand, 38342402 - 38342328
Alignment:
| Q |
128 |
gatacctcgttccaatttctggttccatggttttccacatatgcttttaatatttcatcttcttcttttgaccat |
202 |
Q |
| |
|
|||||||| |||||||||| ||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38342402 |
gatacctctttccaatttccggttccatgtttttcaacatatgcttttaatatttcatcctcttcttttgaccat |
38342328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 128 - 202
Target Start/End: Complemental strand, 38446595 - 38446521
Alignment:
| Q |
128 |
gatacctcgttccaatttctggttccatggttttccacatatgcttttaatatttcatcttcttcttttgaccat |
202 |
Q |
| |
|
|||||||| |||||||||| ||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38446595 |
gatacctctttccaatttccggttccatgtttttcaacatatgcttttaatatttcatcctcttcttttgaccat |
38446521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University