View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9711_low_35 (Length: 296)
Name: NF9711_low_35
Description: NF9711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9711_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 151 - 285
Target Start/End: Original strand, 17607622 - 17607756
Alignment:
| Q |
151 |
attagatcctattacatacaatatgacatgcttcacttatacagttgtagtttgggtctcataaaacattaagagttttactgaaaaacttcacggtaat |
250 |
Q |
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| T |
17607622 |
attagatcctattacataccatatgacatgcttcacttatacaattgtagtttgggactcataaaacattaagagttttactgaaaaacttcacggtaat |
17607721 |
T |
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| Q |
251 |
acaaaagacttcatgtccatattttaaaatttcat |
285 |
Q |
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| T |
17607722 |
acaaaagacttcatgtccatattttaaaatttcat |
17607756 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 49
Target Start/End: Original strand, 17764183 - 17764216
Alignment:
| Q |
16 |
gacatgtctattagatccaaatgcaaacataagt |
49 |
Q |
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| T |
17764183 |
gacatgtctattagattcaaatgcaaacataagt |
17764216 |
T |
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