View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9711_low_36 (Length: 295)
Name: NF9711_low_36
Description: NF9711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9711_low_36 |
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Alignment Details
Target: chr6 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 16 - 169
Target Start/End: Original strand, 24414168 - 24414321
Alignment:
| Q |
16 |
aatgaagaaaaacaatcaaataagcaaatgaagacatataggtctggaaatcagttcttgcctattcaccaataacttcaataggatttaagaaatacgc |
115 |
Q |
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| T |
24414168 |
aatgaagaaaaacaatcaaataagcaaatgaagacatataggtctggaaattggttcttgcctattcaccaataacttcaataggatttaagaaatatgt |
24414267 |
T |
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| Q |
116 |
tccttcacaataggataaaagacgggactgatttatctcaaatcaactaataat |
169 |
Q |
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| T |
24414268 |
tccttcacaataggataaaagacgggactgatttatctcaaatcaactaataat |
24414321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 19024371 - 19024446
Alignment:
| Q |
16 |
aatgaagaaaaacaatcaaataagcaaatgaagacatataggtctggaaatcagttcttgcctattcaccaataac |
91 |
Q |
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| T |
19024371 |
aatgaagaaaaacaatcaaataagcaaatgaagacatataggtctggaaatttattctttcctattcaccaataac |
19024446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 279
Target Start/End: Original strand, 30397397 - 30397438
Alignment:
| Q |
238 |
tgcaatataggttcgtctagaaaacattcctaagaaatacca |
279 |
Q |
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| T |
30397397 |
tgcaatataggttagtctagaaaacagtcttaagaaatacca |
30397438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 48011422 - 48011384
Alignment:
| Q |
166 |
taatgtactttgattcccatgtcatattctctgcctcat |
204 |
Q |
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| T |
48011422 |
taatgtactttgattcccatgtcacatgctctgcctcat |
48011384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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