View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9711_low_38 (Length: 288)

Name: NF9711_low_38
Description: NF9711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9711_low_38
NF9711_low_38
[»] chr1 (1 HSPs)
chr1 (1-282)||(4807273-4807570)


Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 4807570 - 4807273
Alignment:
Q  1 tgttgactagagtatcattttggtttgactggattggctgaatagacaaggcttcacagactacagctggaaaacgtaggcaggacaagaaggtaaaatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4807570 tgttgactagagtatcattttggtttgactggattggctgaatagacaaggcttcacagactacagctggaaaacgtaggcaggacaagaaggtaaaatt 4807471  T
Q  101 catgattagattccattattattctttctgtttctcactcactctcttctaaagttacaaataca-------aaatttaaattaaaacaaagctttctgc 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||    
T  4807470 catgattagattccattattattctttctgtttctcactcactctcttctaaagttacaaatacaaaatagaaaatttaaattaaaacaaagctttctgc 4807371  T
Q  194 ttcaggattattactacttaaattaa---------ttaaagtagagatccaagctatactactctgcactgccaccacacactacactcctatgcttc 282  Q
    ||||||||||||||||||||||||||         ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4807370 ttcaggattattactacttaaattaatgctctttgttaaagttgagatccaagctatactactctgcactgccaccacacactacactcctatgcttc 4807273  T

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