View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9711_low_39 (Length: 280)
Name: NF9711_low_39
Description: NF9711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9711_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 268
Target Start/End: Complemental strand, 22748755 - 22748506
Alignment:
| Q |
18 |
aattttcctattcactcattttgtttcttaattgtgatgaatatttgactcttaaattatctttagatcattgatttcttaagagtaacgtccatcttgc |
117 |
Q |
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| T |
22748755 |
aattttcctattcactcattttgtttcttaattgtgatgaatatttga-tcttaaattatctttagatcattgatttcttaagagtaacgcccatcttgc |
22748657 |
T |
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| Q |
118 |
tagnnnnnnncattgtatatatgacaagaaaatgttttgttctcttgcaggcttctactgaccaaagtgaagtggatacaagtattccttttcaaactgc |
217 |
Q |
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| T |
22748656 |
tagtttttttcattgtatatatgacaagaaaatgttttgttctcttgcaggcttctactgaccaaagtgaagtggatacaagtattccttttcaaactgc |
22748557 |
T |
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| Q |
218 |
attatgtgcttgctccataatccatctcgctggaattataatggtgatgtc |
268 |
Q |
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| T |
22748556 |
attatgtgcttgctccataatccatctcgttggaattataatggtgatgtc |
22748506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 14239035 - 14238999
Alignment:
| Q |
161 |
cttgcaggcttctactgaccaaagtgaagtggataca |
197 |
Q |
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| T |
14239035 |
cttgcaggcttctactgaccaaagtgaagtggataca |
14238999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 14375089 - 14375133
Alignment:
| Q |
153 |
tttgttctcttgcaggcttctactgaccaaagtgaagtggataca |
197 |
Q |
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| T |
14375089 |
tttgttgtcttgcaggcttctactgaccaaagagcagtggataca |
14375133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 196
Target Start/End: Complemental strand, 41450102 - 41450066
Alignment:
| Q |
160 |
tcttgcaggcttctactgaccaaagtgaagtggatac |
196 |
Q |
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| T |
41450102 |
tcttccaggcttctactgaccaaagtgcagtggatac |
41450066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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