View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9711_low_4 (Length: 552)
Name: NF9711_low_4
Description: NF9711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9711_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 17 - 540
Target Start/End: Original strand, 47077108 - 47077616
Alignment:
| Q |
17 |
aggagaatctcctatcaaatctaaaacaacaaacggtgatggcaaatgaatattccatttaccccccaatgtaataacaacaatgtcacactagaaaagg |
116 |
Q |
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| T |
47077108 |
aggagaatctcctatcaaatctaaaacagcaaacggtgatggcaaatgaatattccatttaccccccaatgtaataacaacaatgtcacactagaaaagg |
47077207 |
T |
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| Q |
117 |
tgtattcaccattttctactttctaaggga-caacaagctaagttacagagacactacacccacagttcacaaaattacaagtggtgaataatataggta |
215 |
Q |
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| T |
47077208 |
tgtattcaccattttctactttctaagggaacaacaagctaagt-----------------cacagttcacaaaattacaagtggtgaataatataggta |
47077290 |
T |
|
| Q |
216 |
aattagaaaaatatgtgactagcttggtctattatttttccaattgagtaacaaatttactacaaacaaaatcatccatactannnnnnn-ctgtaagac |
314 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
47077291 |
aattggaaaaatatgtgactagcttggtctattatttttccaattcagtaacaaatttactacaaacaaaatcatccatactattttttttctgtaagac |
47077390 |
T |
|
| Q |
315 |
atagacattaatcataggcttatcccgcaatatccgttcacgtggctgagtagtgtttggactcttactaagttacatacacttaaattcttatgatcgc |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
47077391 |
atagacattaatcataggcttatcccgcaatatccgttcacgtggctgagtagtgtttggactcttactaatttacatacacttaaattcttatgatcgc |
47077490 |
T |
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| Q |
415 |
attttccaaaaaatgtgataataatgtacttgttgttgttgatgtaatactctcctctatagtccttctcctattcagcttaatatatccttcactgcag |
514 |
Q |
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| T |
47077491 |
attttccaaaaaatgtgataataatgtacttgttgttgttgatgtaatactctcctctatagtccttctcctattcagcttaatatatccttcactgcag |
47077590 |
T |
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| Q |
515 |
ccttttcatttcccttctcctatctg |
540 |
Q |
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| T |
47077591 |
ccttttcatttcccttcccctatctg |
47077616 |
T |
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