View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9711_low_40 (Length: 275)
Name: NF9711_low_40
Description: NF9711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9711_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 7 - 218
Target Start/End: Original strand, 32156719 - 32156930
Alignment:
| Q |
7 |
tggaggagcgatccctgtaacaattatcccccttccaggagattttacaattgcatcaaattgtggttgcacttctatgacattctttccagatgtgaca |
106 |
Q |
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| T |
32156719 |
tggaggagcgatccctgtaacaattatcccccttccaggagattttacaattgcatcaaattgtggttgcacttctatgacattctttccagatgtgaca |
32156818 |
T |
|
| Q |
107 |
acaacctaggagaaataataagcttcataatgttctatatgcacatattgcaaaaaatattcaatctgttttttcaaatacattttcaaaaacttcaaat |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32156819 |
acaacctaggagaaataataagcttcataatgttctatatgcacatattgcaaaaaatattcaatctgttttttcaaatacattttcaaaaacttcaaat |
32156918 |
T |
|
| Q |
207 |
aacatcttctct |
218 |
Q |
| |
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|||||||||||| |
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| T |
32156919 |
aacatcttctct |
32156930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 7 - 120
Target Start/End: Original strand, 32167156 - 32167269
Alignment:
| Q |
7 |
tggaggagcgatccctgtaacaattatcccccttccaggagattttacaattgcatcaaattgtggttgcacttctatgacattctttccagatgtgaca |
106 |
Q |
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||||||||||||||||||||||||||||||| | || ||| |||| ||||||||||||||||||||||| |||||| ||||||| | ||||||||||||| |
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| T |
32167156 |
tggaggagcgatccctgtaacaattatccccatcccgggacatttaacaattgcatcaaattgtggttgtacttctgtgacattttctccagatgtgaca |
32167255 |
T |
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| Q |
107 |
acaacctaggagaa |
120 |
Q |
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| |||||||||||| |
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| T |
32167256 |
agaacctaggagaa |
32167269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 8 - 135
Target Start/End: Original strand, 27321535 - 27321662
Alignment:
| Q |
8 |
ggaggagcgatccctgtaacaattatcccccttccaggagattttacaattgcatcaaattgtggttgcacttctatgacattctttccagatgtgacaa |
107 |
Q |
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| T |
27321535 |
ggaggcgcaatccctgtaacacttactccccttccagataatttagctagtgcatcaaattgtggttgtacttctaagacattttttccagatgtgacaa |
27321634 |
T |
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| Q |
108 |
caacctaggagaaataataagcttcata |
135 |
Q |
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||||||| || ||||||| ||||||||| |
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| T |
27321635 |
caacctatgataaataatgagcttcata |
27321662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 32164485 - 32164609
Alignment:
| Q |
7 |
tggaggagcgatccctgtaacaattatcccccttccaggagattttacaattgcatcaaattgtggttgcacttctatgacattctttccagatgtgaca |
106 |
Q |
| |
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||||||||| ||||| |||||||||| ||||||||||| |||| |||||||||| | |||||| || | |||| ||||||| |||||||||| ||| |
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| T |
32164485 |
tggaggagcaatcccggtaacaattaatccccttccaggtaatttagcaattgcatccagttgtggctgtatttctgtgacattttttccagatgcgacc |
32164584 |
T |
|
| Q |
107 |
acaacctaggagaaataataagctt |
131 |
Q |
| |
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||||||||| ||||||||||||||| |
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| T |
32164585 |
acaacctagaagaaataataagctt |
32164609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 135
Target Start/End: Original strand, 27347484 - 27347611
Alignment:
| Q |
8 |
ggaggagcgatccctgtaacaattatcccccttccaggagattttacaattgcatcaaattgtggttgcacttctatgacattctttccagatgtgacaa |
107 |
Q |
| |
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||||| || |||||||||||| ||| |||||||||| |||| | | |||||||||||||| ||| ||||||| |||| | ||||||||||||| || |
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| T |
27347484 |
ggaggtgcaatccctgtaacacttactccccttccagataatttagctagtgcatcaaattgtgcttgtacttctaagacaatttttccagatgtgagaa |
27347583 |
T |
|
| Q |
108 |
caacctaggagaaataataagcttcata |
135 |
Q |
| |
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||||||| |||||||||| ||||||||| |
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| T |
27347584 |
caacctaagagaaataatgagcttcata |
27347611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 127
Target Start/End: Complemental strand, 27360322 - 27360250
Alignment:
| Q |
55 |
aattgcatcaaattgtggttgcacttctatgacattctttccagatgtgacaacaacctaggagaaataataa |
127 |
Q |
| |
|
|||||||||||||||||| || | | || |||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
27360322 |
aattgcatcaaattgtggatgtattgctttgacattctttccagatgtgaccacaacctaagagaaataataa |
27360250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 226 - 265
Target Start/End: Original strand, 32156977 - 32157016
Alignment:
| Q |
226 |
gaattattaggaattacaagtaagtcatcttgaatctgtg |
265 |
Q |
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||||||||||||||||||||||||||||||||||| |||| |
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| T |
32156977 |
gaattattaggaattacaagtaagtcatcttgaatttgtg |
32157016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 123
Target Start/End: Original strand, 27262489 - 27262595
Alignment:
| Q |
17 |
atccctgtaacaattatcccccttccaggagattttacaattgcatcaaattgtggttgcacttctatgacattctttccagatgtgacaacaacctagg |
116 |
Q |
| |
|
|||||||||||| ||| |||||||||| |||| | | ||||||||| |||||||| ||||||| |||||| |||||||||||| ||||||||| | |
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| T |
27262489 |
atccctgtaacacttactccccttccagataatttagctagtgcatcaaaatgtggttgtacttctaagacatttgttccagatgtgagaacaacctaag |
27262588 |
T |
|
| Q |
117 |
agaaata |
123 |
Q |
| |
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|||||| |
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|
| T |
27262589 |
tgaaata |
27262595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 55 - 151
Target Start/End: Complemental strand, 44291617 - 44291521
Alignment:
| Q |
55 |
aattgcatcaaattgtggttgcacttctatgacattctttccagatgtgacaacaacctaggagaaataataagcttcataatgttctatatgcaca |
151 |
Q |
| |
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|||||||||||| |||||||| |||||| | ||||||||| | |||| || ||||||||| | |||||||||||||| ||||||| ||||||||| |
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| T |
44291617 |
aattgcatcaaaatgtggttgtacttctgtcacattctttgcggatgcaaccacaacctagaacaaataataagcttcttaatgttggatatgcaca |
44291521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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