View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9711_low_42 (Length: 270)
Name: NF9711_low_42
Description: NF9711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9711_low_42 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 48434476 - 48434219
Alignment:
| Q |
1 |
aatcttgttctataccgaaagacttgaatgaaaattggggacgaaagatgcactaagacataattcagtgaaaggaaatgacggatttgggttgacttcc |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
48434476 |
aatcgtgttctataccgaaagacttgaatgaaaattggggacgaaagatgccccaagacataattccgtgaaaggaaatgacggatttgggttgacttcc |
48434377 |
T |
|
| Q |
101 |
gggtgatttgttccatttcattttatcgtaatgataacttagttcagatgactataaacatataaactttattttttgttacaaacttttgagcgtgttg |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
48434376 |
ggatgatttgttccatttcattttatcgtaatgataacttaattcagatgactataaacacataaactttattttttgttacaaacctttgagcgtgttg |
48434277 |
T |
|
| Q |
201 |
tgaccgtggaattaaaccctaaacactgattgtgtctgtgtttttctgcatggttcct |
258 |
Q |
| |
|
||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
48434276 |
tgaccgtggaattaaacccaaaaaactgattgggtctgtgtttttctgcatggttcct |
48434219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University