View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9711_low_47 (Length: 253)

Name: NF9711_low_47
Description: NF9711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9711_low_47
NF9711_low_47
[»] chr8 (20 HSPs)
chr8 (1-240)||(25599608-25599847)
chr8 (2-240)||(24916713-24916945)
chr8 (141-240)||(25470200-25470299)
chr8 (141-240)||(25667712-25667811)
chr8 (141-240)||(25331423-25331522)
chr8 (141-240)||(25408113-25408212)
chr8 (80-240)||(25711208-25711369)
chr8 (141-240)||(25635657-25635756)
chr8 (91-240)||(25433799-25433951)
chr8 (141-240)||(24890131-24890230)
chr8 (141-240)||(25380043-25380142)
chr8 (141-240)||(25826069-25826168)
chr8 (146-240)||(25688569-25688663)
chr8 (141-240)||(25428643-25428742)
chr8 (141-240)||(25486232-25486331)
chr8 (141-240)||(25501382-25501481)
chr8 (141-235)||(25687469-25687563)
chr8 (154-240)||(25731031-25731117)
chr8 (117-240)||(22880397-22880520)
chr8 (146-236)||(23262322-23262412)
[»] scaffold0746 (1 HSPs)
scaffold0746 (154-240)||(4470-4556)
[»] scaffold0070 (2 HSPs)
scaffold0070 (154-240)||(25318-25404)
scaffold0070 (141-240)||(40998-41097)
[»] chr4 (1 HSPs)
chr4 (80-240)||(10332330-10332491)
[»] chr1 (1 HSPs)
chr1 (174-236)||(23394101-23394163)


Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 25599847 - 25599608
Alignment:
Q  1 cgttggaagctcattttttaatcactataaatatccccatagccatcagtctcatgcatgcatcacatctcttatccaaacacgtactaaggaaaatggt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25599847 cgttggaagctcattttttaatcactataaatatccccatagccatcagtctcatgcatgcatcacatctcttatccaaacacgtactaaggaaaatggt 25599748  T
Q  101 taatctactagctcacctctttcttttttcactctcacgacattgttttgtgtcttgcttaactgcgaatacaaaaaacatcacaacagatctatatgct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25599747 taatctactagctcacctctttcttttttcactctcacgacattgttttgtgtcttgcttaactgcgaatacaaaaaacatcacaacagatctatatgct 25599648  T
Q  201 cttatagcattcaaatccctaattacttcagacccctatg 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  25599647 cttatagcattcaaatccctaattacttcagacccctatg 25599608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 2 - 240
Target Start/End: Original strand, 24916713 - 24916945
Alignment:
Q  2 gttggaagctcattttttaatcactataaatatccccatagccatcagtctcatgcatgcatcacatctcttatccaaacacgtactaaggaaaatggtt 101  Q
    ||||||||||||||||||||||||||||||| |||  || ||||| |||| ||||||||||||||||||||||||||||||| | |||||||||||||||    
T  24916713 gttggaagctcattttttaatcactataaatgtcct-atggccatgagtcccatgcatgcatcacatctcttatccaaacacatgctaaggaaaatggtt 24916811  T
Q  102 aatctactagctcacctctttcttttttcactctcacgacattgttttgtgtcttgcttaactgcgaatacaaaaaacatcacaacagatctatatgctc 201  Q
    |||||| |||||||  |||||||||||||||| |||| ||||||||||     |||||||||||||||||||||||||||||||||||||| || |||||    
T  24916812 aatctattagctcatatctttcttttttcactttcactacattgtttt-----ttgcttaactgcgaatacaaaaaacatcacaacagatcaatctgctc 24916906  T
Q  202 ttatagcattcaaatccctaattacttcagacccctatg 240  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  24916907 ttatagctttcaaatccctaattacttcagacccctatg 24916945  T

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Target: chr8; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 141 - 240
Target Start/End: Complemental strand, 25470299 - 25470200
Alignment:
Q  141 cattgttttgtgtcttgcttaactgcgaatacaaaaaacatcacaacagatctatatgctcttatagcattcaaatccctaattacttcagacccctatg 240  Q
    |||||||||||| |||||||| ||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||| ||||    
T  25470299 cattgttttgtggcttgcttagctgtgaatacaaaaaacatcacaacagatcaatatgctcttctagcattcaaatccctcattacttcagacccttatg 25470200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 141 - 240
Target Start/End: Complemental strand, 25667811 - 25667712
Alignment:
Q  141 cattgttttgtgtcttgcttaactgcgaatacaaaaaacatcacaacagatctatatgctcttatagcattcaaatccctaattacttcagacccctatg 240  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||| || ||| ||| ||||||||||||| ||||||||||||||||||||||    
T  25667811 cattgttttgtggcttgcttagctgcgaatacaaaaaacatcacaacagatcaatctgcacttctagcattcaaatcactaattacttcagacccctatg 25667712  T

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Target: chr8; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 141 - 240
Target Start/End: Complemental strand, 25331522 - 25331423
Alignment:
Q  141 cattgttttgtgtcttgcttaactgcgaatacaaaaaacatcacaacagatctatatgctcttatagcattcaaatccctaattacttcagacccctatg 240  Q
    |||||||||||| |||||||| || ||||||||||||||||||||||||||| || ||||||| ||||||| |||||||| |||||||||||||||||||    
T  25331522 cattgttttgtggcttgcttagctacgaatacaaaaaacatcacaacagatcaatctgctcttctagcatttaaatccctcattacttcagacccctatg 25331423  T

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Target: chr8; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 141 - 240
Target Start/End: Complemental strand, 25408212 - 25408113
Alignment:
Q  141 cattgttttgtgtcttgcttaactgcgaatacaaaaaacatcacaacagatctatatgctcttatagcattcaaatccctaattacttcagacccctatg 240  Q
    |||||||||||| |||||||| ||| |||||||||||||||||||||||||| || ||||||| |||||||||||||||| |||||||||||||| ||||    
T  25408212 cattgttttgtggcttgcttagctgtgaatacaaaaaacatcacaacagatcaatctgctcttctagcattcaaatccctcattacttcagacccttatg 25408113  T

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Target: chr8; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 80 - 240
Target Start/End: Complemental strand, 25711369 - 25711208
Alignment:
Q  80 acacgtactaaggaaaa-tggttaatctactagctcacctctttcttttttcactctcacgacattgttttgtgtcttgcttaactgcgaatacaaaaaa 178  Q
    |||| |||||||||||| |||| |||||| || |||   |||| |||||||| || |||   ||||||| |||| |||||||| ||||||||||||||||    
T  25711369 acacatactaaggaaaaatggtgaatctattatctcgtttcttacttttttctctatcattgcattgttatgtggcttgcttagctgcgaatacaaaaaa 25711270  T
Q  179 catcacaacagatctatatgctcttatagcattcaaatccctaattacttcagacccctatg 240  Q
    ||||||||| |||| | |||||||| ||||||||||||| ||||||||||||||||| ||||    
T  25711269 catcacaactgatcaacatgctcttctagcattcaaatcactaattacttcagacccttatg 25711208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 141 - 240
Target Start/End: Complemental strand, 25635756 - 25635657
Alignment:
Q  141 cattgttttgtgtcttgcttaactgcgaatacaaaaaacatcacaacagatctatatgctcttatagcattcaaatccctaattacttcagacccctatg 240  Q
    |||||||||||| || ||||| || || |||||||||||||||||||||||| |||||||||  ||||||||||||| ||||||||||||||||||||||    
T  25635756 cattgttttgtggctagcttagctacgtatacaaaaaacatcacaacagatcaatatgctctcctagcattcaaatcactaattacttcagacccctatg 25635657  T

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Target: chr8; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 91 - 240
Target Start/End: Complemental strand, 25433951 - 25433799
Alignment:
Q  91 ggaaaatggttaatctactagctcacctctttcttttttcactctcacgacattgttttgt----gtcttgcttaactgcgaatacaaaaaacatcacaa 186  Q
    |||||||||||||||||  | |||| |||||||||||||| ||||||   ||||||| |||    || ||||||| |||| ||||||||||||||||| |    
T  25433951 ggaaaatggttaatctatcatctcatctctttcttttttcgctctcagtgcattgttgtgttattgt-ttgcttagctgcaaatacaaaaaacatcacca 25433853  T
Q  187 cagatctatatgctcttatagcattcaaatccctaattacttcagacccctatg 240  Q
    | |||| |||||||||| ||||||||||||| ||||||||||||||||| ||||    
T  25433852 ctgatcaatatgctcttctagcattcaaatctctaattacttcagacccttatg 25433799  T

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Target: chr8; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 141 - 240
Target Start/End: Original strand, 24890131 - 24890230
Alignment:
Q  141 cattgttttgtgtcttgcttaactgcgaatacaaaaaacatcacaacagatctatatgctcttatagcattcaaatccctaattacttcagacccctatg 240  Q
    |||||||||||| |||||||| || |||||||||||||||||||||| |||| || | | ||| ||||||||||||| ||||||||||||||||||||||    
T  24890131 cattgttttgtggcttgcttagctacgaatacaaaaaacatcacaactgatcaatcttcacttttagcattcaaatcactaattacttcagacccctatg 24890230  T

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Target: chr8; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 141 - 240
Target Start/End: Complemental strand, 25380142 - 25380043
Alignment:
Q  141 cattgttttgtgtcttgcttaactgcgaatacaaaaaacatcacaacagatctatatgctcttatagcattcaaatccctaattacttcagacccctatg 240  Q
    |||||||||||| |||||||| ||||||||| ||||||||||||||| |||| | ||| |||| |||||||||||||||| |||||||||||||| ||||    
T  25380142 cattgttttgtggcttgcttagctgcgaatataaaaaacatcacaactgatcaacatgttcttctagcattcaaatccctgattacttcagacccatatg 25380043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 141 - 240
Target Start/End: Complemental strand, 25826168 - 25826069
Alignment:
Q  141 cattgttttgtgtcttgcttaactgcgaatacaaaaaacatcacaacagatctatatgctcttatagcattcaaatccctaattacttcagacccctatg 240  Q
    |||||||||||| ||||||||  ||||||| |||||| ||||||||| |||| || ||||||| ||||||||||||| ||||||||||||||||||||||    
T  25826168 cattgttttgtggcttgcttagttgcgaatccaaaaaccatcacaactgatcaatctgctcttctagcattcaaatcactaattacttcagacccctatg 25826069  T

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Target: chr8; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 146 - 240
Target Start/End: Complemental strand, 25688663 - 25688569
Alignment:
Q  146 ttttgtgtcttgcttaactgcgaatacaaaaaacatcacaacagatctatatgctcttatagcattcaaatccctaattacttcagacccctatg 240  Q
    ||||||| |||||||| |||||||||| |||||||||||||| |||| || ||||||| |||||||||||||  |||||||||||||||||||||    
T  25688663 ttttgtggcttgcttagctgcgaatacgaaaaacatcacaacggatcaatctgctcttctagcattcaaatctttaattacttcagacccctatg 25688569  T

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Target: chr8; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 141 - 240
Target Start/End: Complemental strand, 25428742 - 25428643
Alignment:
Q  141 cattgttttgtgtcttgcttaactgcgaatacaaaaaacatcacaacagatctatatgctcttatagcattcaaatccctaattacttcagacccctatg 240  Q
    |||||||||||| |||||||| || | |||||||||||||||||||| || | || ||| ||| ||||||||||||| ||||||||||||||||||||||    
T  25428742 cattgttttgtggcttgcttagctaccaatacaaaaaacatcacaactgaccaatctgcccttttagcattcaaatcactaattacttcagacccctatg 25428643  T

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Target: chr8; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 141 - 240
Target Start/End: Complemental strand, 25486331 - 25486232
Alignment:
Q  141 cattgttttgtgtcttgcttaactgcgaatacaaaaaacatcacaacagatctatatgctcttatagcattcaaatccctaattacttcagacccctatg 240  Q
    |||||||||||  |||||||| || ||||||||||||||| |||||| |||| ||  ||||||||||||||||||||  |||||||||||||||||||||    
T  25486331 cattgttttgtagcttgcttagcttcgaatacaaaaaacagcacaactgatcaatccgctcttatagcattcaaatctttaattacttcagacccctatg 25486232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 141 - 240
Target Start/End: Complemental strand, 25501481 - 25501382
Alignment:
Q  141 cattgttttgtgtcttgcttaactgcgaatacaaaaaacatcacaacagatctatatgctcttatagcattcaaatccctaattacttcagacccctatg 240  Q
    |||||||||||| |||||||| || | |||||||||||||||||||| |||| || | | ||| ||||||||||||| ||||||||||||||||||||||    
T  25501481 cattgttttgtggcttgcttagctaccaatacaaaaaacatcacaactgatcaatcttcacttttagcattcaaatcactaattacttcagacccctatg 25501382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 141 - 235
Target Start/End: Complemental strand, 25687563 - 25687469
Alignment:
Q  141 cattgttttgtgtcttgcttaactgcgaatacaaaaaacatcacaacagatctatatgctcttatagcattcaaatccctaattacttcagaccc 235  Q
    |||||||||||| |||||||| ||| ||||||||||||||||||||| |||| || ||||||  |||| ||||||||||| ||||||||||||||    
T  25687563 cattgttttgtggcttgcttagctgtgaatacaaaaaacatcacaactgatcaatctgctctactagctttcaaatccctgattacttcagaccc 25687469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 154 - 240
Target Start/End: Complemental strand, 25731117 - 25731031
Alignment:
Q  154 cttgcttaactgcgaatacaaaaaacatcacaacagatctatatgctcttatagcattcaaatccctaattacttcagacccctatg 240  Q
    |||||||| |||| |||||||||||||||||||| |||| || ||||||| |||| |||||||||||||||||||||||||| ||||    
T  25731117 cttgcttagctgcaaatacaaaaaacatcacaactgatcaatctgctcttctagctttcaaatccctaattacttcagacccttatg 25731031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 117 - 240
Target Start/End: Original strand, 22880397 - 22880520
Alignment:
Q  117 ctctttcttttttcactctcacgacattgttttgtgtcttgcttaactgcgaatacaaaaaacatcacaacagatctatatgctcttatagcattcaaat 216  Q
    |||||||||||||  ||||||   |||||||| ||  |||||||| || | ||||||||||||||||| ||||||  |||||||||| ||||||||||||    
T  22880397 ctctttctttttttgctctcaatgcattgtttcgttgcttgcttagcttcaaatacaaaaaacatcactacagataaatatgctcttctagcattcaaat 22880496  T
Q  217 ccctaattacttcagacccctatg 240  Q
    | || ||||||||||| |||||||    
T  22880497 cacttattacttcagatccctatg 22880520  T

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Target: chr8; HSP #20
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 146 - 236
Target Start/End: Complemental strand, 23262412 - 23262322
Alignment:
Q  146 ttttgtgtcttgcttaactgcgaatacaaaaaacatcacaacagatctatatgctcttatagcattcaaatccctaattacttcagacccc 236  Q
    ||||||| |||||||  |||| ||||||||||||||||| ||||||| || ||||||| |||||||||||| |||||||||||| ||||||    
T  23262412 ttttgtggcttgctttgctgcaaatacaaaaaacatcaccacagatcaatctgctcttctagcattcaaattcctaattacttcggacccc 23262322  T

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Target: scaffold0746 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0746
Description:

Target: scaffold0746; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 154 - 240
Target Start/End: Complemental strand, 4556 - 4470
Alignment:
Q  154 cttgcttaactgcgaatacaaaaaacatcacaacagatctatatgctcttatagcattcaaatccctaattacttcagacccctatg 240  Q
    |||||||| |||| |||||||||||||||||||| |||| || ||||||| ||||||||||||||||||||||||||||||| ||||    
T  4556 cttgcttagctgcaaatacaaaaaacatcacaactgatcaatctgctcttctagcattcaaatccctaattacttcagacccttatg 4470  T

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Target: scaffold0070 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 154 - 240
Target Start/End: Original strand, 25318 - 25404
Alignment:
Q  154 cttgcttaactgcgaatacaaaaaacatcacaacagatctatatgctcttatagcattcaaatccctaattacttcagacccctatg 240  Q
    |||||||| |||| |||||||||||||||||||| |||| || ||||||| ||||||||||||||||||||||||||||||| ||||    
T  25318 cttgcttagctgcaaatacaaaaaacatcacaactgatcaatctgctcttctagcattcaaatccctaattacttcagacccttatg 25404  T

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Target: scaffold0070; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 141 - 240
Target Start/End: Original strand, 40998 - 41097
Alignment:
Q  141 cattgttttgtgtcttgcttaactgcgaatacaaaaaacatcacaacagatctatatgctcttatagcattcaaatccctaattacttcagacccctatg 240  Q
    |||||||||||| |||||||  |||||||||| |||||||||||||| |||| || ||||||| ||||||| |||||  |||||||||||||||||||||    
T  40998 cattgttttgtgacttgctttgctgcgaatacgaaaaacatcacaactgatcaatctgctcttctagcatttaaatctttaattacttcagacccctatg 41097  T

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Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 80 - 240
Target Start/End: Complemental strand, 10332491 - 10332330
Alignment:
Q  80 acacgtactaaggaaaa-tggttaatctactagctcacctctttcttttttcactctcacgacattgttttgtgtcttgcttaactgcgaatacaaaaaa 178  Q
    |||| |||||||||||| |||| |||||| || |||| ||||| |||||||  ||  ||   ||||||||| || |||||||| || | ||| || ||||    
T  10332491 acacatactaaggaaaaatggtgaatctattatctcatctcttactttttttgctaccattgcattgttttatggcttgcttagcttcaaattcagaaaa 10332392  T
Q  179 catcacaacagatctatatgctcttatagcattcaaatccctaattacttcagacccctatg 240  Q
    |||||||||||||| || ||| ||| ||||||||||||| ||||||||||||||||||||||    
T  10332391 catcacaacagatcaatctgcacttctagcattcaaatcactaattacttcagacccctatg 10332330  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 236
Target Start/End: Original strand, 23394101 - 23394163
Alignment:
Q  174 aaaaacatcacaacagatctatatgctcttatagcattcaaatccctaattacttcagacccc 236  Q
    ||||||||| | ||||||| || ||||||| | |||||||||||||| |||||||||||||||    
T  23394101 aaaaacatctccacagatcaatctgctcttctcgcattcaaatccctcattacttcagacccc 23394163  T

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