View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9711_low_48 (Length: 253)
Name: NF9711_low_48
Description: NF9711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9711_low_48 |
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Alignment Details
Target: chr1 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 103 - 236
Target Start/End: Complemental strand, 26040969 - 26040836
Alignment:
| Q |
103 |
taaattaacgacatttaaaattaaggtttattacattaagtggataacttatgagttgcggcgccttgttatattcattaacaaacaatcaaacatactc |
202 |
Q |
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| T |
26040969 |
taaattaactacatttaaaattatggtttattacattaagtggataacttatgagttgcggcgccttgttatattcattaacaaacaatcaaacatactc |
26040870 |
T |
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| Q |
203 |
aatccgtcccagtttaactgagccagttgaccat |
236 |
Q |
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| T |
26040869 |
aatccgtcacagtttaacttagtcagttgaccat |
26040836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 26041257 - 26041147
Alignment:
| Q |
1 |
ttgacggtgtaaaaagtttttatataggtcatgcatcaaaattaatctcaatagttaatttttgtaaattttgaagattaaaatacatttgcaatattgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
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| T |
26041257 |
ttgacggtgtaaaaagtttttatataggtcatgcatcaaaattaatctcaatagttaatttttgtaaatttttaagattaaaatacatttgcaatattcg |
26041158 |
T |
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| Q |
101 |
cataaattaac |
111 |
Q |
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| T |
26041157 |
cataacttaac |
26041147 |
T |
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