View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9711_low_5 (Length: 541)
Name: NF9711_low_5
Description: NF9711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9711_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 443; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 1 - 523
Target Start/End: Original strand, 52098463 - 52098985
Alignment:
| Q |
1 |
tgaaatcgaagcttgcatggtcgctttaacggatctaactcatcaaaattggctagaaattcagcaacagcaccagtgatatcttccatagttccatgtt |
100 |
Q |
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| T |
52098463 |
tgaaatcgaagcttgcatggtcgctttaacggatctaactcatcaaaattggctagaaattcagcaacagcaccagtgatatcttccatagttccatgtt |
52098562 |
T |
|
| Q |
101 |
taataagaacatggttccataagtctctccacctggtagatatgaggctggtttcaagtgcatattcatttggtagaaaagatactatgcagcctagaat |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52098563 |
taacaagaacatggttccataagtctctccacctggtagatatgaggctggtttcaagtgcatattcatttggtagaaaagatactatgcagcctagaat |
52098662 |
T |
|
| Q |
201 |
ttcatctggcaaatatctaaacagattctgaaaactctcttccatggaatggtagctctaatgtttcaaatttgtattaggattttaagagaaagaatat |
300 |
Q |
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|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
52098663 |
ttcatctggcaaatatctaaacagattctgaacactttcttccatggaatggtagctctaatgtttcaaatttgtattaggatattaagagaaagaatat |
52098762 |
T |
|
| Q |
301 |
gaagactcaaaattaatgtactttgtgttatgaaccttgtggatgttatttatccaaatattcaaccctccagtcaatatctaccggtcgcggtctattc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
52098763 |
gaagactcaaaattaatgtactttgtgttatgaaccctgtggatgttatttatccaaatattcaaccttccagtcaatatttaccggtcgcggtctattc |
52098862 |
T |
|
| Q |
401 |
ttcctgttgaattcaattctataatagtatggtctatttttatattacaatagaatca---nnnnnnnnnattacaatatggtatggactatgaaccatc |
497 |
Q |
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| T |
52098863 |
ttcctgttgaattcaattct---atagtatggtctatttttatattacaatagaatcattttttttttttattacaatatggtatggactatgaaccatc |
52098959 |
T |
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| Q |
498 |
tctgtttaactttatttgctatagcg |
523 |
Q |
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| T |
52098960 |
tctgtttaactttatttgctatagcg |
52098985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 52091360 - 52091585
Alignment:
| Q |
1 |
tgaaatcgaagcttgcatggtcgctttaacggatctaactcatcaaaattggctagaaattcagcaacagcaccagtgatatcttccatagttccatgtt |
100 |
Q |
| |
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|||||| ||||||| || ||||||||||| ||||| |||| |||||||| | |||||||||||||| | ||| |||||||||||| ||||||||||||| |
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| T |
52091360 |
tgaaattgaagctttcacggtcgctttaatggatcccactcttcaaaatttgttagaaattcagcaaaaacactagtgatatcttctatagttccatgtt |
52091459 |
T |
|
| Q |
101 |
taataagaacatggttccataagtctctccacctggta-----gatatgaggctggtttcaagtgcatattcatttggtagaaaagatactatgcagcct |
195 |
Q |
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| | |||||| |||||||| |||| |||||| || ||| ||||||||||| |||| ||||||||||||||| ||||||| ||||| |||||||||| |
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| T |
52091460 |
tgacaagaacttggttccacaagtttctccatctagtagatatgatatgaggcttgtttgaagtgcatattcattaggtagaagagatattatgcagcct |
52091559 |
T |
|
| Q |
196 |
agaatttcatctggcaaatatctaaa |
221 |
Q |
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||| ||||||||||||||| |||||| |
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| T |
52091560 |
agagtttcatctggcaaatttctaaa |
52091585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 115 - 190
Target Start/End: Complemental strand, 7659517 - 7659442
Alignment:
| Q |
115 |
ttccataagtctctccacctggtagatatgaggctggtttcaagtgcatattcatttggtagaaaagatactatgc |
190 |
Q |
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|||||||||||||||||||| |||||||||||| ||||||| | || ||||||||||||||||||| ||||||| |
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| T |
7659517 |
ttccataagtctctccaccttgtagatatgaggatggtttccattgatgattcatttggtagaaaagaaactatgc |
7659442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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