View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9711_low_51 (Length: 250)
Name: NF9711_low_51
Description: NF9711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9711_low_51 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 13 - 233
Target Start/End: Complemental strand, 42639772 - 42639552
Alignment:
| Q |
13 |
gagataaacgacgttttggttgtgtattgcactacagttaatctattatctatctaaaatccactttttaacgtcaccatcttttcatcaaaatcaatag |
112 |
Q |
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| T |
42639772 |
gagataaacgacgttttggttgtgtattgcactacagttaatctattatctatctaaaatccactttttaacgtcaccatcttttcatcaaaatcaatag |
42639673 |
T |
|
| Q |
113 |
agaatgaaattcatttttaaccaagacatatatgctttgcgtaagcctattgtacatatggttcgtatgtttgtgacaacaattgaaacaacgttgcatg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42639672 |
agaatgaaattcatttttaaccaagacatatatgctttgcgtaagcctattgtacatatggttcgtatgtttgtgacaacaattgaaacaacgttgcatg |
42639573 |
T |
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| Q |
213 |
tagctacaatgtttcgcttgt |
233 |
Q |
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||||||||||||||||||||| |
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| T |
42639572 |
tagctacaatgtttcgcttgt |
42639552 |
T |
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