View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9711_low_52 (Length: 250)
Name: NF9711_low_52
Description: NF9711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9711_low_52 |
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| [»] scaffold0839 (1 HSPs) |
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| [»] scaffold0010 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 46 - 180
Target Start/End: Complemental strand, 34763312 - 34763178
Alignment:
| Q |
46 |
ttttgacaagttatccatttcccaagtggcattggcagctataaacctatggagcctttggaaatgtcgcaatagcaaactatgggacaatgttgataca |
145 |
Q |
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|||||||| ||| |||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34763312 |
ttttgacaggttgtccatttctcaagtggcattggcagctatgactctatggagcctttggaaatgtcgcaatagcaaactttgggacaatgttgataca |
34763213 |
T |
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| Q |
146 |
ccactgcttgtggtcattaatcgagcaagagacac |
180 |
Q |
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| T |
34763212 |
ccgtcgcttgtggtttgtaatcgagcaagagacac |
34763178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 74 - 180
Target Start/End: Original strand, 34763563 - 34763669
Alignment:
| Q |
74 |
gcattggcagctataaacctatggagcctttggaaatgtcgcaatagcaaactatgggacaatgttgatacaccactgcttgtggtcattaatcgagcaa |
173 |
Q |
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|||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
34763563 |
gcattggcagctatgactctatggagcctttggaaatgtcgcaatagcaaactttgggacaatgttgatacaccgtcgcttgtggtttgtaatcgagcaa |
34763662 |
T |
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| Q |
174 |
gagacac |
180 |
Q |
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||||||| |
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| T |
34763663 |
gagacac |
34763669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0839 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0839
Description:
Target: scaffold0839; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 46 - 180
Target Start/End: Complemental strand, 5078 - 4944
Alignment:
| Q |
46 |
ttttgacaagttatccatttcccaagtggcattggcagctataaacctatggagcctttggaaatgtcgcaatagcaaactatgggacaatgttgataca |
145 |
Q |
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| T |
5078 |
ttttgacaggttatccatttctcaagtggcattggcggctatgactctacggagcctttgaaaatgtcgcaatagcaaactttgggacaatgttgataca |
4979 |
T |
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| Q |
146 |
ccactgcttgtggtcattaatcgagcaagagacac |
180 |
Q |
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| T |
4978 |
ccgccgcttgtggtttgtaatcgagcaagagacac |
4944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 46 - 180
Target Start/End: Complemental strand, 237314 - 237180
Alignment:
| Q |
46 |
ttttgacaagttatccatttcccaagtggcattggcagctataaacctatggagcctttggaaatgtcgcaatagcaaactatgggacaatgttgataca |
145 |
Q |
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|||||||| |||||||||||| ||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
237314 |
ttttgacaggttatccatttctcaagtggcattggtagctatgactctatggagcctttggaaatgtcgcaatagcaaactttgggacaatgttgataca |
237215 |
T |
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| Q |
146 |
ccactgcttgtggtcattaatcgagcaagagacac |
180 |
Q |
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|| |||| |||| |||||||||||||||||| |
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| T |
237214 |
ccgtcgcttatggtttgtaatcgagcaagagacac |
237180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 46 - 180
Target Start/End: Complemental strand, 8771879 - 8771745
Alignment:
| Q |
46 |
ttttgacaagttatccatttcccaagtggcattggcagctataaacctatggagcctttggaaatgtcgcaatagcaaactatgggacaatgttgataca |
145 |
Q |
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|||||||| |||||||||||| ||||||||||||| |||||| | ||||||||||||||||||||||| ||||| ||||| |||||||||||||||||| |
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| T |
8771879 |
ttttgacaggttatccatttctcaagtggcattggtagctatgactctatggagcctttggaaatgtcggaatagaaaactttgggacaatgttgataca |
8771780 |
T |
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| Q |
146 |
ccactgcttgtggtcattaatcgagcaagagacac |
180 |
Q |
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|| ||||||||| |||||||||||||||||| |
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| T |
8771779 |
ccgtcgcttgtggtttgtaatcgagcaagagacac |
8771745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 46 - 180
Target Start/End: Original strand, 49507998 - 49508132
Alignment:
| Q |
46 |
ttttgacaagttatccatttcccaagtggcattggcagctataaacctatggagcctttggaaatgtcgcaatagcaaactatgggacaatgttgataca |
145 |
Q |
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|||||||| |||||||||||| ||||||||||||| || ||| | ||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
49507998 |
ttttgacaggttatccatttctcaagtggcattggtagttatgactctatggagcctttggaaatgtcgcaatagcaaactttgggataatgttgataca |
49508097 |
T |
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| Q |
146 |
ccactgcttgtggtcattaatcgagcaagagacac |
180 |
Q |
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|| ||||||||| |||||||||||||||||| |
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| T |
49508098 |
ccgtcgcttgtggtttgtaatcgagcaagagacac |
49508132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 46 - 184
Target Start/End: Complemental strand, 11596649 - 11596510
Alignment:
| Q |
46 |
ttttgacaagttatccatttcccaagtggcattggcagctataaacctatggagcctttggaaatgtcgcaatagcaaactatgggacaatgttgataca |
145 |
Q |
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|||||| | |||||||||||| ||||||||| |||||||||| | | ||| ||||||||||||| |||||| |||||||| ||||||| |||||||||| |
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| T |
11596649 |
ttttgataggttatccatttctcaagtggcaatggcagctatgactccatgaagcctttggaaatttcgcaagagcaaactttgggacagtgttgataca |
11596550 |
T |
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| Q |
146 |
ccactgcttgtggtcattaatcgagca-agagacactcta |
184 |
Q |
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|| | ||||||||||||| |||||||| ||| |||||||| |
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| T |
11596549 |
ccgccgcttgtggtcattgatcgagcagagacacactcta |
11596510 |
T |
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