View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9711_low_53 (Length: 249)
Name: NF9711_low_53
Description: NF9711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9711_low_53 |
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Alignment Details
Target: chr2 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 10121077 - 10121311
Alignment:
| Q |
1 |
ttttaatcagtttttatttggattggtttggactggaacaacgtaatatttttgtaaacattttccatcaaaaaatgtatcttgtataaactgagataat |
100 |
Q |
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| T |
10121077 |
ttttaatcaatttttatttggattggtttggattggaacaacgtaatatttttgtaaacattttccatcaaaaaatttatcttgtatgaattgagataat |
10121176 |
T |
|
| Q |
101 |
aattaagttcaaccctctttc----nnnnnnnnnnntaagttcaacccaaaatgaattaattaaattttggtagaagtaaattatttgtactcatatata |
196 |
Q |
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| T |
10121177 |
aattaagttcaaccctctttcaaaaaaaaaaaaaattaagttcaac------tgaatgaattaaatttcggtagaagtaaattatttgtacttatatata |
10121270 |
T |
|
| Q |
197 |
tttgttgtatgcaaccgtacctctttttcgcggatgatgtc |
237 |
Q |
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|||||||| |||| ||||||||||||||||||||||||||| |
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| T |
10121271 |
tttgttgtctgcacccgtacctctttttcgcggatgatgtc |
10121311 |
T |
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