View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9711_low_56 (Length: 247)
Name: NF9711_low_56
Description: NF9711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9711_low_56 |
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Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 18649848 - 18650085
Alignment:
| Q |
1 |
aaaattcgtaattaaaacattaacaaaaacaagatcaaaaaatgaaa-ttgtgagtgtattaatatttgagagtaatgcaaggatatcttcaactaaaac |
99 |
Q |
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| T |
18649848 |
aaaattcgtaattaaaatattaacaaaaacaagatcgaaaaatgaaaattgagagtgtattaatatttgagagtaatgcaaggacatcttcaactaaaac |
18649947 |
T |
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| Q |
100 |
cttttattttgactataaagtgttgtttaacaaaagagatgaaagagaaaaaattgagaccaatgaacgacactaacacttggacactaataataatttg |
199 |
Q |
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| T |
18649948 |
cttttattttgactataaagtgttgtttaacaaaagagatgaaagagaaaaaattgagaccaatgaacgacactaacacttggacactagtaataatttg |
18650047 |
T |
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| Q |
200 |
agaaaaggnnnnnnntgaacgtttatcacacaatgtct |
237 |
Q |
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| T |
18650048 |
agaaaatgaaaaaaatgaacgtttatcacacaatgtct |
18650085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 52 - 235
Target Start/End: Original strand, 18646654 - 18646837
Alignment:
| Q |
52 |
gagtgtattaatatttgagagtaatgcaaggatatcttcaactaaaaccttttattttgactataaagtgttgtttaacaaaagagatgaaagagaaaaa |
151 |
Q |
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| T |
18646654 |
gagtgtattaatatttgagagcaatggaatgacatcttcaactaaaaccttttatttagattataaagtgttgtttaacaaaagagatgaaagagaaaaa |
18646753 |
T |
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| Q |
152 |
attgagaccaatgaacgacactaacacttggacactaataataatttgagaaaaggnnnnnnntgaacgtttatcacacaatgt |
235 |
Q |
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| T |
18646754 |
attgagaccaatgaacgacactaacacttggacattagtaataatttgagaaaatgataaaaatgaacgtttatcacacaatgt |
18646837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 92
Target Start/End: Original strand, 18650759 - 18650843
Alignment:
| Q |
9 |
taattaaaacattaacaaaaacaagatcaaaaaatgaaat-tgtgagtgtattaatatttgagagtaatgcaaggatatcttcaa |
92 |
Q |
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|||||||||||||||||||||||| ||| |||||||||| || ||||||||||||||||||||||||||||| || |||||||| |
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| T |
18650759 |
taattaaaacattaacaaaaacaaaatcgaaaaatgaaaagtgagagtgtattaatatttgagagtaatgcaatgacatcttcaa |
18650843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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