View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9711_low_57 (Length: 246)

Name: NF9711_low_57
Description: NF9711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9711_low_57
NF9711_low_57
[»] chr4 (14 HSPs)
chr4 (1-241)||(37754959-37755198)
chr4 (155-241)||(5208031-5208116)
chr4 (155-241)||(52467543-52467628)
chr4 (131-241)||(6677362-6677468)
chr4 (163-241)||(5112466-5112543)
chr4 (155-241)||(6542370-6542455)
chr4 (155-241)||(24969006-24969091)
chr4 (4-90)||(26699444-26699530)
chr4 (155-241)||(48142937-48143021)
chr4 (155-241)||(52082846-52082930)
chr4 (205-241)||(6375970-6376006)
chr4 (28-76)||(12743951-12743999)
chr4 (28-76)||(12745340-12745388)
chr4 (155-207)||(37229911-37229963)
[»] chr8 (18 HSPs)
chr8 (1-90)||(7597695-7597784)
chr8 (129-241)||(41266862-41266970)
chr8 (159-241)||(3318741-3318823)
chr8 (21-90)||(11712019-11712088)
chr8 (156-241)||(29796512-29796596)
chr8 (28-76)||(3303696-3303744)
chr8 (155-239)||(18141717-18141800)
chr8 (156-207)||(7597542-7597593)
chr8 (154-241)||(11712189-11712276)
chr8 (21-80)||(29796339-29796398)
chr8 (155-241)||(4731553-4731637)
chr8 (155-241)||(8153656-8153741)
chr8 (155-241)||(43036318-43036402)
chr8 (28-138)||(1345397-1345505)
chr8 (155-207)||(1872098-1872150)
chr8 (28-76)||(3073900-3073947)
chr8 (28-76)||(4743240-4743288)
chr8 (36-76)||(15212880-15212920)
[»] chr2 (9 HSPs)
chr2 (21-90)||(24398138-24398207)
chr2 (131-217)||(28671847-28671929)
chr2 (4-80)||(42019872-42019948)
chr2 (155-241)||(723933-724017)
chr2 (155-241)||(11151780-11151864)
chr2 (155-241)||(34139960-34140044)
chr2 (155-241)||(39284780-39284864)
chr2 (155-241)||(42362247-42362331)
chr2 (36-76)||(11067399-11067439)
[»] chr1 (11 HSPs)
chr1 (154-237)||(2263166-2263248)
chr1 (99-138)||(49982183-49982222)
chr1 (155-241)||(197097-197181)
chr1 (155-241)||(31659133-31659217)
chr1 (155-241)||(37503743-37503827)
chr1 (28-76)||(3156959-3157007)
chr1 (28-76)||(4552663-4552711)
chr1 (28-76)||(13659362-13659410)
chr1 (28-76)||(28223447-28223495)
chr1 (28-76)||(42298001-42298049)
chr1 (100-144)||(43342393-43342437)
[»] scaffold0219 (1 HSPs)
scaffold0219 (21-90)||(27461-27530)
[»] chr7 (8 HSPs)
chr7 (155-241)||(4253718-4253803)
chr7 (155-207)||(36146597-36146649)
chr7 (39-90)||(36574552-36574603)
chr7 (155-241)||(4538729-4538813)
chr7 (155-241)||(36574704-36574789)
chr7 (28-77)||(30814529-30814578)
chr7 (154-246)||(40808480-40808570)
chr7 (28-76)||(496009-496057)
[»] chr3 (11 HSPs)
chr3 (155-241)||(29810763-29810847)
chr3 (151-195)||(1313990-1314034)
chr3 (155-207)||(29196576-29196628)
chr3 (167-241)||(5373118-5373191)
chr3 (155-241)||(51398709-51398793)
chr3 (155-239)||(5236645-5236727)
chr3 (28-76)||(16499123-16499171)
chr3 (28-76)||(19683915-19683963)
chr3 (28-76)||(37408552-37408600)
chr3 (155-207)||(44700667-44700719)
chr3 (21-73)||(55301991-55302043)
[»] chr5 (6 HSPs)
chr5 (28-76)||(33831774-33831822)
chr5 (155-241)||(42426424-42426508)
chr5 (155-241)||(42926788-42926872)
chr5 (21-90)||(316843-316912)
chr5 (28-76)||(213559-213607)
chr5 (28-76)||(42428456-42428504)
[»] scaffold0129 (1 HSPs)
scaffold0129 (155-229)||(19128-19200)
[»] scaffold0006 (1 HSPs)
scaffold0006 (28-76)||(149123-149171)
[»] chr6 (3 HSPs)
chr6 (28-76)||(26954312-26954360)
chr6 (28-76)||(28137434-28137482)
chr6 (28-76)||(33211211-33211259)


Alignment Details
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 37754959 - 37755198
Alignment:
Q  1 atatttatccagtttagtctaacaattacctactatgggggagggattgatctcttcaaaccattatcaatgagttttttagaaagagatnnnnnnnngg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||        ||    
T  37754959 atatttatccagtttagtctaacaattacctactatgggggagagattgatctcttcaaaccattatcaatgagttttttagaaagagataaaaaaa-gg 37755057  T
Q  101 ttacaagaaattatcttcaataaattctctaagaacaagagactcaatatataatttcactcacccaaggtatttacaaatatttcctaatccaatagaa 200  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||| ||||    
T  37755058 ttacaagaaattatcttcaccaaattctctaagaacaagagactcaatatataatttcactcacctaaggtgtttacaaatatttcataatccaagagaa 37755157  T
Q  201 cctctcaccaaagactctcaatcctaaaattacctcctttg 241  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  37755158 cctctcaccaaagactctcaatcctaaagttacctcctttg 37755198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 155 - 241
Target Start/End: Original strand, 5208031 - 5208116
Alignment:
Q  155 tttcactcacccaaggtatttacaaatatttcctaatccaatagaacctctcaccaaagactctcaatcctaaaattacctcctttg 241  Q
    ||||||||||||||||| ||||||||| ||||| ||||||| |||||| |||||||||||| | ||| |||| | ||||||||||||    
T  5208031 tttcactcacccaaggtgtttacaaatgtttcccaatccaagagaacc-ctcaccaaagacccgcaaccctatagttacctcctttg 5208116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 155 - 241
Target Start/End: Original strand, 52467543 - 52467628
Alignment:
Q  155 tttcactcacccaaggtatttacaaatatttcctaatccaatagaacctctcaccaaagactctcaatcctaaaattacctcctttg 241  Q
    ||||||||||||||||| ||||||||| ||||| || |||| |||||| || | ||||||| ||||| |||||||||||||||||||    
T  52467543 tttcactcacccaaggtgtttacaaatgtttcccaacccaagagaacc-ctaatcaaagaccctcaaccctaaaattacctcctttg 52467628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 241
Target Start/End: Complemental strand, 6677468 - 6677362
Alignment:
Q  131 aagaacaagagactcaatatataatttcactcacccaaggtatttacaaatatttcctaatccaatagaacctctcaccaaagactctcaatcctaaaat 230  Q
    ||||||||||||||||||     |||||||||| |||| || ||||||||| ||||| || |||| |||||| || | ||||||| ||||| |||||| |    
T  6677468 aagaacaagagactcaatt----atttcactcatccaatgtgtttacaaatgtttcccaacccaagagaacccctgaacaaagacactcaaccctaaagt 6677373  T
Q  231 tacctcctttg 241  Q
    |||||||||||    
T  6677372 tacctcctttg 6677362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 163 - 241
Target Start/End: Original strand, 5112466 - 5112543
Alignment:
Q  163 acccaaggtatttacaaatatttcctaatccaatagaacctctcaccaaagactctcaatcctaaaattacctcctttg 241  Q
    ||||||||| ||||||| | ||||| || |||| |||||||| || ||||||| ||||| |||||||||||||||||||    
T  5112466 acccaaggtgtttacaa-tgtttcccaacccaagagaacctcacaacaaagacactcaaacctaaaattacctcctttg 5112543  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 241
Target Start/End: Original strand, 6542370 - 6542455
Alignment:
Q  155 tttcactcacccaaggtatttacaaatatttcctaatccaatagaacctctcaccaaagactctcaatcctaaaattacctcctttg 241  Q
    ||||||||||||||||| ||||| ||| ||||| || |||| ||||||||    ||||||| ||||| |||||| ||||||||||||    
T  6542370 tttcactcacccaaggtgtttac-aatgtttcccaacccaagagaacctcattacaaagacactcaaccctaaagttacctcctttg 6542455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 241
Target Start/End: Complemental strand, 24969091 - 24969006
Alignment:
Q  155 tttcactcacccaaggtatttacaaatatttcctaatccaatagaacctctcaccaaagactctcaatcctaaaattacctcctttg 241  Q
    ||||||||||||||||| ||||||||| ||||| || |||| |||| |||| | |||||||  |||| | |||| ||||||||||||    
T  24969091 tttcactcacccaaggtgtttacaaatgtttcccaacccaagagaa-ctctaatcaaagaccgtcaaccttaaagttacctcctttg 24969006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 26699444 - 26699530
Alignment:
Q  4 tttatccagtttagtctaacaattacctactatgggggagggattgatctcttcaaaccattatcaatgagttttttagaaagagat 90  Q
    |||| ||||||  ||| |||||| ||||||| ||||  || ||||||||||| ||| ||||||| |||||||| |||| ||||||||    
T  26699444 tttacccagttcggtccaacaatgacctactctgggatagagattgatctctccaatccattataaatgagttctttacaaagagat 26699530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 241
Target Start/End: Complemental strand, 48143021 - 48142937
Alignment:
Q  155 tttcactcacccaaggtatttacaaatatttcctaatccaatagaacctctcaccaaagactctcaatcctaaaattacctcctttg 241  Q
    ||||||||||||||||| ||||||| | ||||| || |||| ||||| ||| | ||||||| ||||| |||||| ||||||||||||    
T  48143021 tttcactcacccaaggtgtttacaa-tgtttcccaacccaagagaac-tctaatcaaagaccctcaaccctaaagttacctcctttg 48142937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 241
Target Start/End: Original strand, 52082846 - 52082930
Alignment:
Q  155 tttcactcacccaaggtatttacaaatatttcctaatccaatagaacctctcaccaaagactctcaatcctaaaattacctcctttg 241  Q
    ||||||||||||||||| ||||| ||| ||||| || |||| |||| |||| | ||||||| ||||| |||||| ||||||||||||    
T  52082846 tttcactcacccaaggtgtttac-aatgtttcccaacccaagagaa-ctctaatcaaagaccctcaaccctaaagttacctcctttg 52082930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 6376006 - 6375970
Alignment:
Q  205 tcaccaaagactctcaatcctaaaattacctcctttg 241  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  6376006 tcaccaaagaccctcaaccctaaaattacctcctttg 6375970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 12743951 - 12743999
Alignment:
Q  28 acctactatgggggagggattgatctcttcaaaccattatcaatgagtt 76  Q
    ||||| |||||||||| ||||||||||| ||| ||| ||||||||||||    
T  12743951 acctaatatgggggagagattgatctctccaatccactatcaatgagtt 12743999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 12745340 - 12745388
Alignment:
Q  28 acctactatgggggagggattgatctcttcaaaccattatcaatgagtt 76  Q
    ||||| |||||||||| ||||||||||| ||| ||| ||||||||||||    
T  12745340 acctaatatgggggagagattgatctctccaatccactatcaatgagtt 12745388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 37229911 - 37229963
Alignment:
Q  155 tttcactcacccaaggtatttacaaatatttcctaatccaatagaacctctca 207  Q
    ||||||||||||||||| ||||||||| ||| | || |||| |||||||||||    
T  37229911 tttcactcacccaaggtgtttacaaatgttttccaacccaagagaacctctca 37229963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 7597784 - 7597695
Alignment:
Q  1 atatttatccagtttagtctaacaattacctactatgggggagggattgatctcttcaaaccattatcaatgagttttttagaaagagat 90  Q
    ||||||||||||||  |||||||||| |||||||||||||||| ||||||||||| ||| ||| ||||||||  || |||| ||||||||    
T  7597784 atatttatccagttcggtctaacaatgacctactatgggggagagattgatctctccaatccactatcaatgcattctttacaaagagat 7597695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 129 - 241
Target Start/End: Complemental strand, 41266970 - 41266862
Alignment:
Q  129 ctaagaacaagagactcaatatataatttcactcacccaaggtatttacaaatatttcctaatccaatagaacctctcaccaaagactctcaatcctaaa 228  Q
    ||||||||||||||||||||     ||||||||||||||| |||||||||| | | ||| || |||| |||||||||||||||||||  |||| ||||||    
T  41266970 ctaagaacaagagactcaatg----atttcactcacccaaagtatttacaactgtctcccaacccaagagaacctctcaccaaagacattcaaccctaaa 41266875  T
Q  229 attacctcctttg 241  Q
     ||||||| ||||    
T  41266874 gttacctcatttg 41266862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 159 - 241
Target Start/End: Original strand, 3318741 - 3318823
Alignment:
Q  159 actcacccaaggtatttacaaatatttcctaatccaatagaacctctcaccaaagactctcaatcctaaaattacctcctttg 241  Q
    ||||||||||||| ||| ||||| |||||||| |||| |||||||| |||||||||| ||||| |||||| ||||||| ||||    
T  3318741 actcacccaaggtgttttcaaatgtttcctaacccaagagaacctcccaccaaagaccctcaaccctaaagttacctcatttg 3318823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 11712019 - 11712088
Alignment:
Q  21 aacaattacctactatgggggagggattgatctcttcaaaccattatcaatgagttttttagaaagagat 90  Q
    |||||| ||||||| || ||||| ||||||||||||||| ||| |||||||||||| |||| ||||||||    
T  11712019 aacaatgacctactttgagggagagattgatctcttcaatccactatcaatgagttatttacaaagagat 11712088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 241
Target Start/End: Original strand, 29796512 - 29796596
Alignment:
Q  156 ttcactcacccaaggtatttacaaatatttcctaatccaatagaacctctcaccaaagactctcaatcctaaaattacctcctttg 241  Q
    ||||||| |||||| ||||||||||| ||||| || |||| |||||| ||| |||||||  ||||| |||||| ||||||||||||    
T  29796512 ttcactcgcccaagatatttacaaatgtttcccaacccaagagaacc-ctcgccaaagatcctcaaccctaaagttacctcctttg 29796596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 3303696 - 3303744
Alignment:
Q  28 acctactatgggggagggattgatctcttcaaaccattatcaatgagtt 76  Q
    ||||||| |||||||| ||||||||||||||| ||| ||||||||||||    
T  3303696 acctactgtgggggagagattgatctcttcaatccactatcaatgagtt 3303744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 239
Target Start/End: Complemental strand, 18141800 - 18141717
Alignment:
Q  155 tttcactcacccaaggtatttacaaatatttcctaatccaatagaacctctcaccaaagactctcaatcctaaaattacctcctt 239  Q
    |||||||| |||||||| ||||||||| ||||| || | || |||||| || | ||||||| ||||| |||||||||||||||||    
T  18141800 tttcactcgcccaaggtgtttacaaatgtttcccaacctaagagaacc-ctaatcaaagaccctcaaccctaaaattacctcctt 18141717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 207
Target Start/End: Complemental strand, 7597593 - 7597542
Alignment:
Q  156 ttcactcacccaaggtatttacaaatatttcctaatccaatagaacctctca 207  Q
    ||||||||| |||||||||||||||| ||||| ||||||| |||| ||||||    
T  7597593 ttcactcactcaaggtatttacaaatgtttcccaatccaagagaaactctca 7597542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 241
Target Start/End: Original strand, 11712189 - 11712276
Alignment:
Q  154 atttcactcacccaaggtatttacaaatatttcctaatccaatagaacctctcaccaaagactctcaatcctaaaattacctcctttg 241  Q
    |||||||||| ||||| | |||||||||  |||  || |||| | ||||||||||||||||| ||||| |||||| ||||||| ||||    
T  11712189 atttcactcatccaagatgtttacaaatgcttcggaacccaagaaaacctctcaccaaagacactcaaccctaaagttacctcatttg 11712276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 29796339 - 29796398
Alignment:
Q  21 aacaattacctactatgggggagggattgatctcttcaaaccattatcaatgagtttttt 80  Q
    |||||| ||||||  |||||||| ||||||||||| ||| ||||||| ||||||||||||    
T  29796339 aacaatgacctacattgggggagagattgatctctccaatccattataaatgagtttttt 29796398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 241
Target Start/End: Complemental strand, 4731637 - 4731553
Alignment:
Q  155 tttcactcacccaaggtatttacaaatatttcctaatccaatagaacctctcaccaaagactctcaatcctaaaattacctcctttg 241  Q
    ||||||||||||||||| ||||||| | ||||| || |||| ||||| ||| | ||||||| ||||| |||||| ||||||||||||    
T  4731637 tttcactcacccaaggtgtttacaa-tgtttcccaacccaagagaac-tctaatcaaagaccctcaaccctaaagttacctcctttg 4731553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 241
Target Start/End: Complemental strand, 8153741 - 8153656
Alignment:
Q  155 tttcactcacccaaggtatttacaaatatttcctaatccaatagaacctctcaccaaagactctcaatcctaaaattacctcctttg 241  Q
    ||||||||| ||||||| | ||||||| ||||| || |||| ||||| | | | ||||||||||||| | |||||||||||||||||    
T  8153741 tttcactcatccaaggtgtatacaaatgtttcccaacccaaaagaacat-taatcaaagactctcaaccttaaaattacctcctttg 8153656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 241
Target Start/End: Complemental strand, 43036402 - 43036318
Alignment:
Q  155 tttcactcacccaaggtatttacaaatatttcctaatccaatagaacctctcaccaaagactctcaatcctaaaattacctcctttg 241  Q
    ||||||||||||||||| ||||||| | ||||| || |||| ||||| ||| | ||||||| ||||| |||||| ||||||||||||    
T  43036402 tttcactcacccaaggtgtttacaa-tgtttcccaacccaagagaac-tctaatcaaagaccctcaaccctaaagttacctcctttg 43036318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 138
Target Start/End: Original strand, 1345397 - 1345505
Alignment:
Q  28 acctactatgggggagggattgatctcttcaaaccattatcaatgagttttttagaaagagatnnnnnnnnggttacaagaaattatcttcaataaattc 127  Q
    ||||||| |||||||| |||||| |||||||| ||| |||||||||||| |||  ||||||||        ||||||||||||||| |||||||||| ||    
T  1345397 acctactctgggggagagattgaactcttcaatccactatcaatgagttcttt-caaagagat-acatatgggttacaagaaattagcttcaataaactc 1345494  T
Q  128 tctaagaacaa 138  Q
     | ||||||||    
T  1345495 acaaagaacaa 1345505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 1872098 - 1872150
Alignment:
Q  155 tttcactcacccaaggtatttacaaatatttcctaatccaatagaacctctca 207  Q
    ||||||||| |||| |||||||||||| ||| | ||||||| |||||||||||    
T  1872098 tttcactcagccaatgtatttacaaatgttttccaatccaagagaacctctca 1872150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 3073900 - 3073947
Alignment:
Q  28 acctactatgggggagggattgatctcttcaaaccattatcaatgagtt 76  Q
    ||||||||||||| || ||||||||||| ||| ||||||||||||||||    
T  3073900 acctactatgggg-agagattgatctctccaagccattatcaatgagtt 3073947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 4743240 - 4743288
Alignment:
Q  28 acctactatgggggagggattgatctcttcaaaccattatcaatgagtt 76  Q
    ||||||| |||||||| ||||||||||| ||| ||| ||||||||||||    
T  4743240 acctactttgggggagagattgatctctccaatccactatcaatgagtt 4743288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 15212920 - 15212880
Alignment:
Q  36 tgggggagggattgatctcttcaaaccattatcaatgagtt 76  Q
    |||||||| ||||||||||| ||| ||||||||||||||||    
T  15212920 tgggggagagattgatctctccaatccattatcaatgagtt 15212880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 24398207 - 24398138
Alignment:
Q  21 aacaattacctactatgggggagggattgatctcttcaaaccattatcaatgagttttttagaaagagat 90  Q
    |||||| |||||||||||||||| ||||||||||| ||| |||||||||||||||| |||| ||||||||    
T  24398207 aacaatgacctactatgggggagagattgatctctccaatccattatcaatgagttctttacaaagagat 24398138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 131 - 217
Target Start/End: Complemental strand, 28671929 - 28671847
Alignment:
Q  131 aagaacaagagactcaatatataatttcactcacccaaggtatttacaaatatttcctaatccaatagaacctctcaccaaagactc 217  Q
    |||||||||||||||||||    |||||||||| |||| | |||||||||| ||||| || |||| |||||||||||||||||||||    
T  28671929 aagaacaagagactcaata----atttcactcatccaatgcatttacaaatgtttcccaacccaaaagaacctctcaccaaagactc 28671847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 42019872 - 42019948
Alignment:
Q  4 tttatccagtttagtctaacaattacctactatgggggagggattgatctcttcaaaccattatcaatgagtttttt 80  Q
    |||||||| ||| ||| |||||| ||||||||||||| || |||||||||||  ||  || ||||||||||||||||    
T  42019872 tttatccaatttggtccaacaataacctactatggggaagagattgatctctcaaattcactatcaatgagtttttt 42019948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 241
Target Start/End: Original strand, 723933 - 724017
Alignment:
Q  155 tttcactcacccaaggtatttacaaatatttcctaatccaatagaacctctcaccaaagactctcaatcctaaaattacctcctttg 241  Q
    ||||||||||||||||| ||||| ||| ||||| || |||| |||| |||| | ||||||| ||||| |||||| ||||||||||||    
T  723933 tttcactcacccaaggtgtttac-aatgtttcccaacccaaaagaa-ctctaatcaaagaccctcaaccctaaagttacctcctttg 724017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 241
Target Start/End: Original strand, 11151780 - 11151864
Alignment:
Q  155 tttcactcacccaaggtatttacaaatatttcctaatccaatagaacctctcaccaaagactctcaatcctaaaattacctcctttg 241  Q
    ||||||||||||||||| ||||| ||| ||||| || |||| |||| |||| | ||||||| ||||| |||||| ||||||||||||    
T  11151780 tttcactcacccaaggtgtttac-aatgtttcccaacccaagagaa-ctctaatcaaagaccctcaaccctaaagttacctcctttg 11151864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 241
Target Start/End: Original strand, 34139960 - 34140044
Alignment:
Q  155 tttcactcacccaaggtatttacaaatatttcctaatccaatagaacctctcaccaaagactctcaatcctaaaattacctcctttg 241  Q
    ||||||||||||||||| ||||| ||| ||||| || |||| |||| |||| | |||||||| |||| |||||| ||||||||||||    
T  34139960 tttcactcacccaaggtgtttac-aatgtttcccaacccaagagaa-ctctaatcaaagactttcaaccctaaagttacctcctttg 34140044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 241
Target Start/End: Complemental strand, 39284864 - 39284780
Alignment:
Q  155 tttcactcacccaaggtatttacaaatatttcctaatccaatagaacctctcaccaaagactctcaatcctaaaattacctcctttg 241  Q
    ||||||||||||||||| ||||||| | ||||| || |||| ||||| ||| | ||||||| ||||| |||||| ||||||||||||    
T  39284864 tttcactcacccaaggtgtttacaa-tgtttcccaacccaagagaac-tctaatcaaagaccctcaaccctaaagttacctcctttg 39284780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 241
Target Start/End: Complemental strand, 42362331 - 42362247
Alignment:
Q  155 tttcactcacccaaggtatttacaaatatttcctaatccaatagaacctctcaccaaagactctcaatcctaaaattacctcctttg 241  Q
    ||||||||||||||||| ||||||| | ||||| || |||| ||||| ||| | ||||||| ||||| |||||| ||||||||||||    
T  42362331 tttcactcacccaaggtgtttacaa-tgtttcccaacccaagagaac-tctaatcaaagaccctcaaccctaaagttacctcctttg 42362247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 11067439 - 11067399
Alignment:
Q  36 tgggggagggattgatctcttcaaaccattatcaatgagtt 76  Q
    |||||||| ||||||||||||||| ||||||| ||||||||    
T  11067439 tgggggagagattgatctcttcaatccattataaatgagtt 11067399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 154 - 237
Target Start/End: Original strand, 2263166 - 2263248
Alignment:
Q  154 atttcactcacccaaggtatttacaaatatttcctaatccaatagaacctctcaccaaagactctcaatcctaaaattacctcc 237  Q
    |||||||||  ||||| | ||||||||||||||||||  ||| |||||| |||||||||||| ||||| |||||||||||||||    
T  2263166 atttcactcgaccaagatgtttacaaatatttcctaactcaagagaacc-ctcaccaaagacactcaaccctaaaattacctcc 2263248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 138
Target Start/End: Original strand, 49982183 - 49982222
Alignment:
Q  99 ggttacaagaaattatcttcaataaattctctaagaacaa 138  Q
    ||||||||||||||| |||||| |||||||||||||||||    
T  49982183 ggttacaagaaattagcttcaacaaattctctaagaacaa 49982222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 241
Target Start/End: Original strand, 197097 - 197181
Alignment:
Q  155 tttcactcacccaaggtatttacaaatatttcctaatccaatagaacctctcaccaaagactctcaatcctaaaattacctcctttg 241  Q
    ||||||||||||||||| ||||| ||| ||||| || |||| |||| |||| | ||||||| ||||| |||||| ||||||||||||    
T  197097 tttcactcacccaaggtgtttac-aatgtttcccaacccaagagaa-ctctaatcaaagaccctcaaccctaaagttacctcctttg 197181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 241
Target Start/End: Complemental strand, 31659217 - 31659133
Alignment:
Q  155 tttcactcacccaaggtatttacaaatatttcctaatccaatagaacctctcaccaaagactctcaatcctaaaattacctcctttg 241  Q
    ||||||||||||||||| ||||||| | ||||| || |||| ||||| ||| | ||||||| ||||| |||||| ||||||||||||    
T  31659217 tttcactcacccaaggtgtttacaa-tgtttccgaacccaagagaac-tctaatcaaagaccctcaaccctaaagttacctcctttg 31659133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 241
Target Start/End: Original strand, 37503743 - 37503827
Alignment:
Q  155 tttcactcacccaaggtatttacaaatatttcctaatccaatagaacctctcaccaaagactctcaatcctaaaattacctcctttg 241  Q
    ||||||||||||||||| ||||| ||||||| | || ||||||||| |||| | ||||||| ||||| |||||| | ||||||||||    
T  37503743 tttcactcacccaaggtgtttac-aatattttccaacccaatagaa-ctctaatcaaagaccctcaaccctaaagtcacctcctttg 37503827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 3157007 - 3156959
Alignment:
Q  28 acctactatgggggagggattgatctcttcaaaccattatcaatgagtt 76  Q
    ||||| |||||||||| ||||||||||| ||| ||| ||||||||||||    
T  3157007 acctaatatgggggagagattgatctctccaatccactatcaatgagtt 3156959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 4552663 - 4552711
Alignment:
Q  28 acctactatgggggagggattgatctcttcaaaccattatcaatgagtt 76  Q
    ||||||| || ||||| ||||||||||| ||| ||||||||||||||||    
T  4552663 acctactctgagggagagattgatctctccaatccattatcaatgagtt 4552711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 13659362 - 13659410
Alignment:
Q  28 acctactatgggggagggattgatctcttcaaaccattatcaatgagtt 76  Q
    ||||||| |||||||| ||||||||||| ||| ||| ||||||||||||    
T  13659362 acctactctgggggagagattgatctctccaatccactatcaatgagtt 13659410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 28223447 - 28223495
Alignment:
Q  28 acctactatgggggagggattgatctcttcaaaccattatcaatgagtt 76  Q
    ||||| |||||||||| ||||||||||| ||| ||| ||||||||||||    
T  28223447 acctaatatgggggagagattgatctctccaatccactatcaatgagtt 28223495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 42298001 - 42298049
Alignment:
Q  28 acctactatgggggagggattgatctcttcaaaccattatcaatgagtt 76  Q
    ||||||| ||| |||| ||||||||||||||| ||| ||||||||||||    
T  42298001 acctactctggaggagagattgatctcttcaatccactatcaatgagtt 42298049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 43342393 - 43342437
Alignment:
Q  100 gttacaagaaattatcttcaataaattctctaagaacaagagact 144  Q
    ||||||||||||||  ||||| || ||||||||||||||||||||    
T  43342393 gttacaagaaattagattcaacaagttctctaagaacaagagact 43342437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 27461 - 27530
Alignment:
Q  21 aacaattacctactatgggggagggattgatctcttcaaaccattatcaatgagttttttagaaagagat 90  Q
    |||||| |||||||||||||||| ||||||||||| ||| ||| ||||||| |||| |||| ||||||||    
T  27461 aacaatgacctactatgggggagagattgatctctccaatccactatcaataagttatttacaaagagat 27530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 155 - 241
Target Start/End: Original strand, 4253718 - 4253803
Alignment:
Q  155 tttcactcacccaaggtatttacaaatatttcctaatccaatagaacctctcaccaaagactctcaatcctaaaattacctcctttg 241  Q
    ||||||||||| ||||| ||||||||| ||| | || |||| |||||| ||||||||| || ||||| |||||| ||||||||||||    
T  4253718 tttcactcacctaaggtgtttacaaatgttttccaacccaagagaacc-ctcaccaaataccctcaaccctaaagttacctcctttg 4253803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 36146597 - 36146649
Alignment:
Q  155 tttcactcacccaaggtatttacaaatatttcctaatccaatagaacctctca 207  Q
    ||||||||||||||||| ||||||||| ||||| || |||| |||||||||||    
T  36146597 tttcactcacccaaggtgtttacaaatgtttcccaacccaagagaacctctca 36146649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 36574552 - 36574603
Alignment:
Q  39 gggagggattgatctcttcaaaccattatcaatgagttttttagaaagagat 90  Q
    |||| |||||||||||| ||||||| |||||||||||| |||| ||||||||    
T  36574552 gggatggattgatctctccaaaccactatcaatgagttctttacaaagagat 36574603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 241
Target Start/End: Original strand, 4538729 - 4538813
Alignment:
Q  155 tttcactcacccaaggtatttacaaatatttcctaatccaatagaacctctcaccaaagactctcaatcctaaaattacctcctttg 241  Q
    ||||||||||||||||| ||||||| | ||||| || |||| ||||  ||| | ||||||||||||| | |||||||||||||||||    
T  4538729 tttcactcacccaaggtgtttacaatt-tttcccaacccaagagaat-tctaatcaaagactctcaaccttaaaattacctcctttg 4538813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 241
Target Start/End: Original strand, 36574704 - 36574789
Alignment:
Q  155 tttcactcacccaaggtatttacaaatatttcctaatccaatagaacctctcaccaaagactctcaatcctaaaattacctcctttg 241  Q
    ||||||||||| ||||| ||||||||| ||| | || |||| |||||| |||| |||||||  |||| |||||| ||||||||||||    
T  36574704 tttcactcacctaaggtgtttacaaatgttttccaacccaagagaacc-ctcatcaaagaccgtcaaccctaaagttacctcctttg 36574789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 30814578 - 30814529
Alignment:
Q  28 acctactatgggggagggattgatctcttcaaaccattatcaatgagttt 77  Q
    ||||| |||||||||| ||||||||||| ||| ||| |||||||||||||    
T  30814578 acctaatatgggggagagattgatctctccaatccactatcaatgagttt 30814529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 246
Target Start/End: Complemental strand, 40808570 - 40808480
Alignment:
Q  154 atttcactcacccaaggtatttacaaatatttcctaatccaatagaacctctcaccaaagactctcaatcctaaaattacctcctttgcttct 246  Q
    |||||||| ||||||||| || ||||||  |||| || | ||||  |||| ||||||||||| ||||| |||||| |||||||||||| ||||    
T  40808570 atttcactaacccaaggtgttcacaaatggttcccaacctaata--acctttcaccaaagacactcaaccctaaagttacctcctttgattct 40808480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 496009 - 496057
Alignment:
Q  28 acctactatgggggagggattgatctcttcaaaccattatcaatgagtt 76  Q
    ||||||||| |||||| ||||||||||| ||| ||| ||||||||||||    
T  496009 acctactataggggagagattgatctctccaatccactatcaatgagtt 496057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 155 - 241
Target Start/End: Complemental strand, 29810847 - 29810763
Alignment:
Q  155 tttcactcacccaaggtatttacaaatatttcctaatccaatagaacctctcaccaaagactctcaatcctaaaattacctcctttg 241  Q
    ||||||||||||||||| ||||||| | ||||| || |||| ||||| ||| | ||||||| ||||| |||||||||||||||||||    
T  29810847 tttcactcacccaaggtgtttacaa-tgtttcccaacccaaaagaac-tctaatcaaagaccctcaaccctaaaattacctcctttg 29810763  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 195
Target Start/End: Original strand, 1313990 - 1314034
Alignment:
Q  151 ataatttcactcacccaaggtatttacaaatatttcctaatccaa 195  Q
    ||||||||||||||||||||| ||||||||| ||||| |||||||    
T  1313990 ataatttcactcacccaaggtgtttacaaatgtttcccaatccaa 1314034  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 29196576 - 29196628
Alignment:
Q  155 tttcactcacccaaggtatttacaaatatttcctaatccaatagaacctctca 207  Q
    ||||||||||||||||| ||||||||| ||||| || |||| |||||||||||    
T  29196576 tttcactcacccaaggtgtttacaaatgtttcccaacccaagagaacctctca 29196628  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 241
Target Start/End: Complemental strand, 5373191 - 5373118
Alignment:
Q  167 aaggtatttacaaatatttcctaatccaatagaacctctcaccaaagactctcaatcctaaaattacctcctttg 241  Q
    ||||| ||||| ||| ||||| || |||| ||||||| ||||||||||||||||| | |||| ||||||||||||    
T  5373191 aaggtgtttaccaatgtttcccaacccaagagaacct-tcaccaaagactctcaaccttaaagttacctcctttg 5373118  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 241
Target Start/End: Complemental strand, 51398793 - 51398709
Alignment:
Q  155 tttcactcacccaaggtatttacaaatatttcctaatccaatagaacctctcaccaaagactctcaatcctaaaattacctcctttg 241  Q
    ||||||||| ||||||| ||||||| ||||||| || |||| | ||| ||| | ||||||||||||| |||||| ||||||||||||    
T  51398793 tttcactcatccaaggtgtttacaa-tatttcccaacccaagaaaac-tctaatcaaagactctcaaccctaaagttacctcctttg 51398709  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 239
Target Start/End: Original strand, 5236645 - 5236727
Alignment:
Q  155 tttcactcacccaaggtatttacaaatatttcctaatccaatagaacctctcaccaaagactctcaatcctaaaattacctcctt 239  Q
    ||||||||||||||||| ||||| ||| ||||| || |||| |||| |||| | ||||||| ||||| |||||| ||||||||||    
T  5236645 tttcactcacccaaggtgtttac-aatgtttcccaacccaagagaa-ctctaatcaaagaccctcaaccctaaagttacctcctt 5236727  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 16499171 - 16499123
Alignment:
Q  28 acctactatgggggagggattgatctcttcaaaccattatcaatgagtt 76  Q
    ||||||| |||||||| ||||||||||| ||| ||| ||||||||||||    
T  16499171 acctactctgggggagagattgatctctccaatccactatcaatgagtt 16499123  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 19683915 - 19683963
Alignment:
Q  28 acctactatgggggagggattgatctcttcaaaccattatcaatgagtt 76  Q
    ||||||||||| |||| ||||||||||| ||| ||| ||||||||||||    
T  19683915 acctactatggaggagagattgatctctccaatccactatcaatgagtt 19683963  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 37408600 - 37408552
Alignment:
Q  28 acctactatgggggagggattgatctcttcaaaccattatcaatgagtt 76  Q
    ||||||| ||| |||| ||||||||||||||| ||| ||||||||||||    
T  37408600 acctactctggaggagagattgatctcttcaatccactatcaatgagtt 37408552  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 44700667 - 44700719
Alignment:
Q  155 tttcactcacccaaggtatttacaaatatttcctaatccaatagaacctctca 207  Q
    ||||||||||||||||| ||||||||| ||||| || |||| |||||| ||||    
T  44700667 tttcactcacccaaggtgtttacaaatgtttcccaacccaagagaacccctca 44700719  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 55301991 - 55302043
Alignment:
Q  21 aacaattacctactatgggggagggattgatctcttcaaaccattatcaatga 73  Q
    |||||| ||||||||||| |||| ||||||||||| ||| ||| |||||||||    
T  55301991 aacaatgacctactatggaggagagattgatctctccaatccactatcaatga 55302043  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 33831822 - 33831774
Alignment:
Q  28 acctactatgggggagggattgatctcttcaaaccattatcaatgagtt 76  Q
    ||||| |||||||||| ||||||||||||||| ||| ||||||||||||    
T  33831822 acctaatatgggggagagattgatctcttcaatccactatcaatgagtt 33831774  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 241
Target Start/End: Original strand, 42426424 - 42426508
Alignment:
Q  155 tttcactcacccaaggtatttacaaatatttcctaatccaatagaacctctcaccaaagactctcaatcctaaaattacctcctttg 241  Q
    ||||||||||||||||| ||||| ||| ||||| |||| || |||| |||| | ||||||| ||||| |||||| ||||||||||||    
T  42426424 tttcactcacccaaggtgtttac-aatgtttcccaatctaagagaa-ctctaatcaaagaccctcaaccctaaagttacctcctttg 42426508  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 241
Target Start/End: Complemental strand, 42926872 - 42926788
Alignment:
Q  155 tttcactcacccaaggtatttacaaatatttcctaatccaatagaacctctcaccaaagactctcaatcctaaaattacctcctttg 241  Q
    ||||||||||||||||| ||||| ||| ||||| ||||||| |||| |||| | |||||||  ||||||||||| ||||||| ||||    
T  42926872 tttcactcacccaaggtgtttac-aatgtttcccaatccaagagaa-ctctaatcaaagaccatcaatcctaaagttacctcatttg 42926788  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 316912 - 316843
Alignment:
Q  21 aacaattacctactatgggggagggattgatctcttcaaaccattatcaatgagttttttagaaagagat 90  Q
    |||||| ||||||| | |||||| |||||||| || | | |||||||||||||||| |||| ||||||||    
T  316912 aacaatgacctactctaggggagagattgatccctccgatccattatcaatgagttctttacaaagagat 316843  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 213607 - 213559
Alignment:
Q  28 acctactatgggggagggattgatctcttcaaaccattatcaatgagtt 76  Q
    ||||||||||| |||| ||||||||||| ||| ||| ||||||||||||    
T  213607 acctactatggaggagagattgatctctccaatccactatcaatgagtt 213559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 42428456 - 42428504
Alignment:
Q  28 acctactatgggggagggattgatctcttcaaaccattatcaatgagtt 76  Q
    ||||| |||||||||| ||||||||||| ||| ||| ||||||||||||    
T  42428456 acctaatatgggggagagattgatctctccaatccactatcaatgagtt 42428504  T

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Target: scaffold0129 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 19128 - 19200
Alignment:
Q  155 tttcactcacccaaggtatttacaaatatttcctaatccaatagaacctctcaccaaagactctcaatcctaaaa 229  Q
    ||||||||||||||| | ||||||||| ||||| || |||| |||||| |||||||||||||||||  |||||||    
T  19128 tttcactcacccaag-tgtttacaaatgtttcccaacccaagagaacc-ctcaccaaagactctcagccctaaaa 19200  T

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Target: scaffold0006 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 149123 - 149171
Alignment:
Q  28 acctactatgggggagggattgatctcttcaaaccattatcaatgagtt 76  Q
    ||||||| |||||||| ||||||||||| ||| ||| ||||||||||||    
T  149123 acctactctgggggagagattgatctctccaatccactatcaatgagtt 149171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 26954312 - 26954360
Alignment:
Q  28 acctactatgggggagggattgatctcttcaaaccattatcaatgagtt 76  Q
    ||||||| |||||||| ||||||||||| ||| ||| ||||||||||||    
T  26954312 acctactttgggggagagattgatctctccaatccactatcaatgagtt 26954360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 28137434 - 28137482
Alignment:
Q  28 acctactatgggggagggattgatctcttcaaaccattatcaatgagtt 76  Q
    ||||||| |||||||| ||||||||||| ||| ||| ||||||||||||    
T  28137434 acctactctgggggagagattgatctctccaatccactatcaatgagtt 28137482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 33211211 - 33211259
Alignment:
Q  28 acctactatgggggagggattgatctcttcaaaccattatcaatgagtt 76  Q
    ||||||| |||||||| ||||||||||| ||| ||||||| ||||||||    
T  33211211 acctactctgggggagagattgatctctccaatccattataaatgagtt 33211259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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