View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9711_low_59 (Length: 245)
Name: NF9711_low_59
Description: NF9711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9711_low_59 |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 23 - 233
Target Start/End: Complemental strand, 3948253 - 3948041
Alignment:
| Q |
23 |
taacagagtactgatgctatatatgttatatcaataaaagtagaaaaagaaaacaagagatgcatgacataactgtgccttactatgaaagtgagagaaa |
122 |
Q |
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| T |
3948253 |
taacagagtactgatgctatatatgttatatcaataaaagtagaaaaagaaaacaagagatgcatgacataactgtgccttcctatgaaagtgagcaaaa |
3948154 |
T |
|
| Q |
123 |
gtaacaaaagaatgtgggagcaataacaaaattgtacaactactacgtagatagagtgtgaaagagaaataagaaaagtgtgatcattattg--agaggt |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3948153 |
gtaacaaaagaatgtgggagcaataacaaaattgtacaactactacgtagatagagtgtgaaagagaaataagaaaagtgtgatcattattgagagaggt |
3948054 |
T |
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| Q |
221 |
aaaatcacaggtt |
233 |
Q |
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||||||||||||| |
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| T |
3948053 |
aaaatcacaggtt |
3948041 |
T |
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