View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9711_low_6 (Length: 471)
Name: NF9711_low_6
Description: NF9711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9711_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 453
Target Start/End: Original strand, 10598822 - 10599268
Alignment:
| Q |
1 |
tcattaggtttcacacctgttttgagcatatcatagaacaattctagtgcttttgtagcaaacccatgttttgcaaaaccatttatgatagaggtccaag |
100 |
Q |
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| T |
10598822 |
tcattaggcttcacacctgtttcaagcatattatagaacaattctagtgcttttgaagcaaatccatgttttgcaaaaccatttatgatagaggtccaag |
10598921 |
T |
|
| Q |
101 |
ttatgacattgcgatcttccatgtcattaaagacctgtaaagcagcttctttgtttccacacttagaatacatagagatcaaagcattattaacacttag |
200 |
Q |
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| T |
10598922 |
ttatgacattgcaatcttccatgtcattaaagacctgtaaagcagcttctttgtttccacacttggaatacatagagatcaaagcattattaacacttaa |
10599021 |
T |
|
| Q |
201 |
gtcagtccgaaatcccatcttcaccaccatggcatggatttgttcacccttacctattgtaccaatacaagcagcaccactcaacaggctagcatataaa |
300 |
Q |
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| T |
10599022 |
gtcagtccgaaatccaatcttaaccaccatggcatgaatttgttcacccttaccaattgtaccaatacaagcagcaccactcaagaggctagcatatgta |
10599121 |
T |
|
| Q |
301 |
aacgaactaactttgctactaccagtgtattcaatttcagggtttatgtcttgttcagaatttaaattcgaatctttcacacttgcatcaccaacgatcc |
400 |
Q |
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|||||||||||| | ||||||| ||||||| |||| ||| | ||||||||||||||| ||||| ||||||||||| ||| |||| |||| | |
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| T |
10599122 |
aacgaactaact---ccactaccaacatattcaacttcacggtccaagtcttgttcagaattcaaattaaaatctttcacatttgtatcatcaacaa--- |
10599215 |
T |
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| Q |
401 |
cactacccgaaaccaaattcttctcaaacaaaacatcaaaacacttgcgagca |
453 |
Q |
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| T |
10599216 |
ctgtctccgaaaccaaattcttctcaaacaaaacatcaaaacacttgcgagca |
10599268 |
T |
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