View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9711_low_61 (Length: 242)
Name: NF9711_low_61
Description: NF9711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9711_low_61 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 3651192 - 3650979
Alignment:
| Q |
18 |
tgtttctctctaccaaaacctcaaactcgttggagttacggtccaccaacactgcgtagcgaccaagttcgtccccaaagtcatggccaaacatgcttgg |
117 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3651192 |
tgtttctctctaccaaaacctcaaactcattggagttacggtccaccaacactgcgtagcgaccaagttcgtccccaaagtcatggccaaacatgcttgg |
3651093 |
T |
|
| Q |
118 |
caaaacaaccatcccctaaaagtaaatagatgaagaatcagcatcttaatcaatgaattttgtggaggtgataacatcctatatagaaagatatgactac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3651092 |
caaaacaaccatcccctaaaagtaaatagatgaagaatcagcatcttaatcaatgaattttgtggaggtgataacatcatatatagaaagatatgactac |
3650993 |
T |
|
| Q |
218 |
ttacgtattcaaca |
231 |
Q |
| |
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|||||||||||||| |
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| T |
3650992 |
ttacgtattcaaca |
3650979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 132
Target Start/End: Original strand, 38466937 - 38467051
Alignment:
| Q |
18 |
tgtttctctctaccaaaacctcaaactcgttggagttacggtccaccaacactgcgtagcgaccaagttcgtccccaaagtcatggccaaacatgcttgg |
117 |
Q |
| |
|
|||||||||| |||||||||||||| |||||| |||||||||||||||||| || || ||||||||||| |||||||||||||| ||||| | | |||| |
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| T |
38466937 |
tgtttctctcaaccaaaacctcaaattcgttgtagttacggtccaccaacatagcatatcgaccaagttcatccccaaagtcatgaccaaaaagggttgg |
38467036 |
T |
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| Q |
118 |
caaaacaaccatccc |
132 |
Q |
| |
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||| ||||||||||| |
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| T |
38467037 |
caatacaaccatccc |
38467051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 177
Target Start/End: Complemental strand, 10196749 - 10196590
Alignment:
| Q |
18 |
tgtttctctctaccaaaacctcaaactcgttggagttacggtccaccaacactgcgtagcgaccaagttcgtccccaaagtcatggccaaacatgcttgg |
117 |
Q |
| |
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|||| ||||| ||||||||||| ||||| || ||||| ||||||||| ||||||||| |||| || | ||||||||||||| ||||| || ||| | |
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| T |
10196749 |
tgttcctctcgaccaaaacctcgaactcattatagttagaatccaccaaccttgcgtagcgtccaatttggcccccaaagtcatgaccaaagattcttag |
10196650 |
T |
|
| Q |
118 |
caaaacaaccatcccctaaaagtaaatagatgaagaatcagcatcttaatcaatgaattt |
177 |
Q |
| |
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| |||||||||| |||||| ||| |||| | |||||| || || ||||| ||||||||| |
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|
| T |
10196649 |
cgaaacaaccatgccctaatagtcaataaaagaagaaacaaaatgttaataaatgaattt |
10196590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 73 - 143
Target Start/End: Complemental strand, 19462519 - 19462449
Alignment:
| Q |
73 |
gtagcgaccaagttcgtccccaaagtcatggccaaacatgcttggcaaaacaaccatcccctaaaagtaaa |
143 |
Q |
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|||||| |||| || ||| |||||||||||||||||||| |||||||||||||| || |||||| |||||| |
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| T |
19462519 |
gtagcgtccaatttggtctccaaagtcatggccaaacattcttggcaaaacaactatgccctaatagtaaa |
19462449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 35349767 - 35349683
Alignment:
| Q |
18 |
tgtttctctctaccaaaacctcaaactcgttggagttacggtccaccaacactgcgtagcgaccaagttcgtccccaaagtcatg |
102 |
Q |
| |
|
|||||| ||| |||||||||||||| |||||| |||||| ||||||||||| || || ||||||||||| |||||||||||||| |
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| T |
35349767 |
tgtttcgctcaaccaaaacctcaaattcgttgtagttacagtccaccaacatagcatatcgaccaagttcatccccaaagtcatg |
35349683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 143
Target Start/End: Original strand, 31941767 - 31941891
Alignment:
| Q |
18 |
tgtttctctctaccaaaacctcaaactcgttggagttacggtccaccaacactgcgtagcgaccaagttcgtccccaaagtcatggccaaacatgcttgg |
117 |
Q |
| |
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|||| ||||| ||||| ||||||||||| ||| ||||| ||||||| ||| ||||| |||| || ||| ||||||||||| |||||||| ||| | |
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| T |
31941767 |
tgttcctctcgaccaacacctcaaactcattgtagttagaatccaccagacttgcatagcgtccaatttggtctccaaagtcatgaccaaacattcttcg |
31941866 |
T |
|
| Q |
118 |
caaaacaaccatcccctaaaagtaaa |
143 |
Q |
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|||||||| ||| |||||| |||||| |
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| T |
31941867 |
caaaacaa-cattccctaatagtaaa |
31941891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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