View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9711_low_64 (Length: 241)
Name: NF9711_low_64
Description: NF9711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9711_low_64 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 131 - 226
Target Start/End: Original strand, 42639447 - 42639542
Alignment:
| Q |
131 |
caacaatttatggagttggagattgagatttgaccaccataatgtggaaaagtttgcagtaaatgcaattaaaaacatgacaaatttggagttaag |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42639447 |
caacaatttatggagttggagattgagatttgaccaccataatgtggaaaagtttgcagtaaatgcaattaaaaacatgacaaatttggagttaag |
42639542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 42639335 - 42639381
Alignment:
| Q |
19 |
gagtggctgattcttcatattcaacgacaccacccattgggaaattg |
65 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42639335 |
gagtggctgattcttcatattcaacgacaccacccattgggaaattg |
42639381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University