View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9711_low_65 (Length: 241)
Name: NF9711_low_65
Description: NF9711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9711_low_65 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 48705483 - 48705313
Alignment:
| Q |
19 |
atattagcagtaatgaaacggttgggaagataggattgagctgcataaacatgtcactctcagatttctatctctctcattctcattacaaaaccagaat |
118 |
Q |
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| T |
48705483 |
atattagcagtaatgaaacggttgggaagataggattgagctgcataaacatgtcactctcagatttctatctctctcattctcattacaaaaccagaat |
48705384 |
T |
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| Q |
119 |
tcaactcatcgtaagggattctcatagggacgtcgtcgctgcagctgcacacggtaattcttactaattgc |
189 |
Q |
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| T |
48705383 |
tcaactcatcgtaagggattctcatagggacgtcgtcgctgcagctgcacacggtaattcttactaattgc |
48705313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 22 - 197
Target Start/End: Complemental strand, 48715470 - 48715295
Alignment:
| Q |
22 |
ttagcagtaatgaaacggttgggaagataggattgagctgcataaacatgtcactctcagatttctatctctctcattctcattacaaaaccagaattca |
121 |
Q |
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|||||||||||| |||||||||||| |||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
48715470 |
ttagcagtaatggaacggttgggaaaataggattgagctgcataaacatgtctctttcagatttctatctttctcattctcattacaaaaccagaattca |
48715371 |
T |
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| Q |
122 |
actcatcgtaagggattctcatagggacgtcgtcgctgcagctgcacacggtaattcttactaattgcatctctct |
197 |
Q |
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| T |
48715370 |
actcatccttagggattcccataaggacgtcgtctctgccgctgcacacggtaattattactaattgcacctctct |
48715295 |
T |
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