View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9711_low_67 (Length: 240)
Name: NF9711_low_67
Description: NF9711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9711_low_67 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 28 - 240
Target Start/End: Original strand, 25565368 - 25565590
Alignment:
| Q |
28 |
ttttttgaaaaggtggttacaacaaaatttgaaccaa----------tagaacgagtcttgtgatgatctctattgcactagcactggtttgtgaagaac |
117 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
25565368 |
ttttttgaaaaggtgattacaacaaaatttgaaccaaaatgacagcatagaacgagtcttgtgatgatctctattgcactagcaccagtttgtgaagaac |
25565467 |
T |
|
| Q |
118 |
cttataatagaagtccttttgtcaaatcttcaagactaacaacttcaatgacattacaatgatatctaatgaaaattacattgaagtttcaagttcctaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25565468 |
cttataatagaagtccttttgtcaaatcttcaagactaacaacttcaatgacattacaatgatatctaatgaaaattacattgaagtttcaagttcctaa |
25565567 |
T |
|
| Q |
218 |
nnnnnnnaactggaaaacatttt |
240 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
25565568 |
ttttttgaactggaaaacatttt |
25565590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University