View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9711_low_7 (Length: 470)
Name: NF9711_low_7
Description: NF9711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9711_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 21 - 411
Target Start/End: Original strand, 26216797 - 26217187
Alignment:
| Q |
21 |
ttctaacatccaccaattcaataatttgaataaaagactcttaactctacttaagaaagacgagattttctggcgacaacgagcaaaagcattatggtat |
120 |
Q |
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| T |
26216797 |
ttctaacatccaccaattcaataatttgaataaaagactcttaactctacttaagaaaaacgagattttctggcgacaacgagcaaaagcattatggtat |
26216896 |
T |
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| Q |
121 |
aaggatggagattaaacaacaaattctttcatgttgcagctacaactagaaagaaggctaaccgaataactagccttagagatgaagatggcacaatatg |
220 |
Q |
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| T |
26216897 |
aaggatggagattaaacaacaaattctttcatgttgcagctacaactagaaagaaggctaaccgaataactagccttagagatgaagatggcacaatatg |
26216996 |
T |
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| Q |
221 |
tagaacgtgggacggaatgacttccatggcttgtgattattttttagaacttttttaaaagcagaatagctccagtgaggcgattcttaatgccattaat |
320 |
Q |
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| T |
26216997 |
tagaacgcgggacggaatgacttccatggcttgtgattattttttagaacttttttagaagcagaatagcaccagtgaggcgattcttaataccattaat |
26217096 |
T |
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| Q |
321 |
ccatctatcactattcactagtatggataatgagtttctatttgctgctttcctatttgaagaattcaaggaaaccatcttctctatgaaa |
411 |
Q |
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| T |
26217097 |
ccatctaacactattcactagtatggataatgagtttctatttgccgctttcctatttgaagaattcaaggaaaccatcttctctatgaaa |
26217187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 408 - 460
Target Start/End: Original strand, 26217246 - 26217298
Alignment:
| Q |
408 |
gaaaaattgtggtcatgatatatttactgcgggttgcactttgaaggtctctg |
460 |
Q |
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| T |
26217246 |
gaaaaattgtggtcatcatatatttactgcgggttgcactttgaaggtctctg |
26217298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 141 - 177
Target Start/End: Original strand, 16322575 - 16322611
Alignment:
| Q |
141 |
aaattctttcatgttgcagctacaactagaaagaagg |
177 |
Q |
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| T |
16322575 |
aaattctttcatgttgcagctatatctagaaagaagg |
16322611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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