View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9711_low_71 (Length: 239)
Name: NF9711_low_71
Description: NF9711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9711_low_71 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 41351149 - 41351370
Alignment:
| Q |
18 |
gaagttattaaacttctaagtattttaggcaaatctttgatatgataattccatcatttgttttaatactcatatctggaattttcctattgtaacttct |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
41351149 |
gaagttattaaacttctaagtattttaggcaaatctttgatatgataattccatcatttgttttaatactcatatctggcattttcctattgtaacttct |
41351248 |
T |
|
| Q |
118 |
caaatttaaggagaaacttactttatttaacgattttgctgttttaaagttgaatggattgtagcatttaattaggcattttttccccctcatcatttat |
217 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41351249 |
caaatttaaggagaaacttaccttatttaacgattttgctgtttttaagttgaatggattgtagcatttaattaggcattttttccccctcatcatttat |
41351348 |
T |
|
| Q |
218 |
tttatccctagatttacttcat |
239 |
Q |
| |
|
||||||||||||||| |||||| |
|
|
| T |
41351349 |
tttatccctagattttcttcat |
41351370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University