View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9711_low_73 (Length: 236)

Name: NF9711_low_73
Description: NF9711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9711_low_73
NF9711_low_73
[»] chr4 (4 HSPs)
chr4 (14-236)||(37754640-37754862)
chr4 (160-194)||(21549065-21549099)
chr4 (152-201)||(21703698-21703747)
chr4 (161-199)||(6199480-6199518)
[»] chr8 (3 HSPs)
chr8 (152-234)||(32901994-32902076)
chr8 (152-235)||(11711810-11711893)
chr8 (152-224)||(29796136-29796207)
[»] chr7 (5 HSPs)
chr7 (169-233)||(4253359-4253422)
chr7 (163-230)||(30843302-30843369)
chr7 (163-234)||(27074082-27074154)
chr7 (163-234)||(27204159-27204231)
chr7 (169-233)||(36574347-36574410)
[»] chr2 (5 HSPs)
chr2 (169-236)||(4561348-4561415)
chr2 (152-203)||(28672172-28672223)
chr2 (161-199)||(16676547-16676585)
chr2 (152-234)||(42019690-42019772)
chr2 (169-227)||(29989465-29989523)
[»] chr1 (5 HSPs)
chr1 (161-234)||(5460180-5460253)
chr1 (152-203)||(37282503-37282554)
chr1 (169-216)||(918699-918746)
chr1 (161-200)||(25700943-25700982)
chr1 (165-201)||(45655486-45655522)
[»] chr3 (2 HSPs)
chr3 (152-229)||(27305524-27305600)
chr3 (166-234)||(1312882-1312950)
[»] chr5 (4 HSPs)
chr5 (152-220)||(30897697-30897765)
chr5 (161-192)||(8038523-8038554)
chr5 (165-199)||(16767650-16767684)
chr5 (165-194)||(34842434-34842463)


Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 236
Target Start/End: Original strand, 37754640 - 37754862
Alignment:
Q  14 ctttcaacaatgatttctttctacgagcgattatgctgaggaagaaactttgttacaaaaatagaggaaatatgtccaatgaaaaagacgatttcccatg 113  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37754640 ctttcaacagtgatttctttctacgagcgattatgccgaggaagaaactttgttacaaaaatagaggaaatatgtccaatgaaaaagacgatttcccatg 37754739  T
Q  114 aaattcttgattctaacaaatcttcattaagattgtcttgaattcctactcaaaatcacaccaataaacttagatgtgtggggcaaaagagaattattaa 213  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  37754740 aaattcttgattctaacaaatcttcattaagattgtcgtgaattcatactcaaaatcaaaccaataaacttagatgtgtggagcaaaagagaattattaa 37754839  T
Q  214 ccaatatcaaattaacctcaagc 236  Q
    |||||||||||||||||||||||    
T  37754840 ccaatatcaaattaacctcaagc 37754862  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 160 - 194
Target Start/End: Complemental strand, 21549099 - 21549065
Alignment:
Q  160 tactcaaaatcacaccaataaacttagatgtgtgg 194  Q
    |||||||||||||||||||||||||||||||||||    
T  21549099 tactcaaaatcacaccaataaacttagatgtgtgg 21549065  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 21703698 - 21703747
Alignment:
Q  152 tgaattcctactcaaaatcacaccaataaacttagatgtgtggggcaaaa 201  Q
    |||||||  ||||||||||||| |||||||||||||||||||| ||||||    
T  21703698 tgaattcgaactcaaaatcacagcaataaacttagatgtgtggagcaaaa 21703747  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 199
Target Start/End: Original strand, 6199480 - 6199518
Alignment:
Q  161 actcaaaatcacaccaataaacttagatgtgtggggcaa 199  Q
    ||||||||||||| ||||||| |||||||||||||||||    
T  6199480 actcaaaatcacatcaataaatttagatgtgtggggcaa 6199518  T

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Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 152 - 234
Target Start/End: Original strand, 32901994 - 32902076
Alignment:
Q  152 tgaattcctactcaaaatcacaccaataaacttagatgtgtggggcaaaagagaattattaaccaatatcaaattaacctcaa 234  Q
    |||||||  ||||||||||| |||||||||||||||||||||| ||||||||||| || |||| |||||||||  ||||||||    
T  32901994 tgaattcggactcaaaatcagaccaataaacttagatgtgtggagcaaaagagaagtagtaactaatatcaaagcaacctcaa 32902076  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 152 - 235
Target Start/End: Original strand, 11711810 - 11711893
Alignment:
Q  152 tgaattcctactcaaaatcacaccaataaacttagatgtgtggggcaaaagagaattattaaccaatatcaaattaacctcaag 235  Q
    |||||||  ||||||||| |||||||||||||||||||||||| |||||||  || || ||||||| || ||| ||||||||||    
T  11711810 tgaattcggactcaaaattacaccaataaacttagatgtgtggagcaaaaggaaagtagtaaccaagataaaagtaacctcaag 11711893  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 224
Target Start/End: Original strand, 29796136 - 29796207
Alignment:
Q  152 tgaattcctactcaaaatcacaccaataaacttagatgtgtggggcaaaagagaattattaaccaatatcaaa 224  Q
    |||||||  |||||| |||||||||||||| || ||||||||| ||||||| ||| || |||||| |||||||    
T  29796136 tgaattcagactcaacatcacaccaataaattttgatgtgtggagcaaaag-gaagtaataaccagtatcaaa 29796207  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 4253359 - 4253422
Alignment:
Q  169 tcacaccaataaacttagatgtgtggggcaaaagagaattattaaccaatatcaaattaacctca 233  Q
    |||||||||||||||||||||||||  |||||||| || ||||||||||||||||| ||||||||    
T  4253359 tcacaccaataaacttagatgtgtgtagcaaaaga-aagtattaaccaatatcaaagtaacctca 4253422  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 30843302 - 30843369
Alignment:
Q  163 tcaaaatcacaccaataaacttagatgtgtggggcaaaagagaattattaaccaatatcaaattaacc 230  Q
    ||||||||||||||||||||||||| |||||| |||||||  || || |||||||||||||| |||||    
T  30843302 tcaaaatcacaccaataaacttagaagtgtggagcaaaaggaaagtagtaaccaatatcaaagtaacc 30843369  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 27074154 - 27074082
Alignment:
Q  163 tcaaaatcacaccaataaacttagatg-tgtggggcaaaagagaattattaaccaatatcaaattaacctcaa 234  Q
    ||||||||||||||||||||||||||| | | | ||||||||||| || | ||||| |||||| |||||||||    
T  27074154 tcaaaatcacaccaataaacttagatgttatcgagcaaaagagaagtagtgaccaacatcaaagtaacctcaa 27074082  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 234
Target Start/End: Original strand, 27204159 - 27204231
Alignment:
Q  163 tcaaaatcacaccaataaacttagatg-tgtggggcaaaagagaattattaaccaatatcaaattaacctcaa 234  Q
    ||||||||||||||||||||||||||| | | | ||||||||||| || | ||||| |||||| |||||||||    
T  27204159 tcaaaatcacaccaataaacttagatgttatcgagcaaaagagaagtagtgaccaacatcaaagtaacctcaa 27204231  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 36574347 - 36574410
Alignment:
Q  169 tcacaccaataaacttagatgtgtggggcaaaagagaattattaaccaatatcaaattaacctca 233  Q
    ||||||||||||||||||||||||||  |||| || || ||||||||||||||||| ||| ||||    
T  36574347 tcacaccaataaacttagatgtgtggatcaaagga-aaatattaaccaatatcaaagtaatctca 36574410  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 169 - 236
Target Start/End: Complemental strand, 4561415 - 4561348
Alignment:
Q  169 tcacaccaataaacttagatgtgtggggcaaaagagaattattaaccaatatcaaattaacctcaagc 236  Q
    ||||||||||||||||||||||||||  ||||||| || || |||||||||||||| |||||| ||||    
T  4561415 tcacaccaataaacttagatgtgtggaacaaaagaaaagtagtaaccaatatcaaagtaaccttaagc 4561348  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 203
Target Start/End: Complemental strand, 28672223 - 28672172
Alignment:
Q  152 tgaattcctactcaaaatcacaccaataaacttagatgtgtggggcaaaaga 203  Q
    ||||||| ||||||||||||||||||||||||||||||| ||| | ||||||    
T  28672223 tgaattcgtactcaaaatcacaccaataaacttagatgtatggagtaaaaga 28672172  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 199
Target Start/End: Complemental strand, 16676585 - 16676547
Alignment:
Q  161 actcaaaatcacaccaataaacttagatgtgtggggcaa 199  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  16676585 actcaaaatcacaccaataaacttatatgtgtggggcaa 16676547  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 234
Target Start/End: Original strand, 42019690 - 42019772
Alignment:
Q  152 tgaattcctactcaaaatcacaccaataaacttagatgtgtggggcaaaagagaattattaaccaatatcaaattaacctcaa 234  Q
    |||||||  |||||||||||||||||| ||| ||||||||| | |||||| |||| ||  || |||||||||| |||||||||    
T  42019690 tgaattcagactcaaaatcacaccaatgaacgtagatgtgtcgagcaaaatagaagtagcaatcaatatcaaagtaacctcaa 42019772  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 29989465 - 29989523
Alignment:
Q  169 tcacaccaataaacttagatgtgtggggcaaaagagaattattaaccaatatcaaatta 227  Q
    |||||| |||||||||||||||||||  |||||  |||||| |||| ||||||||||||    
T  29989465 tcacactaataaacttagatgtgtggatcaaaaaggaattaataacaaatatcaaatta 29989523  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 234
Target Start/End: Complemental strand, 5460253 - 5460180
Alignment:
Q  161 actcaaaatcacaccaataaacttagatgtgtggggcaaaagagaattattaaccaatatcaaattaacctcaa 234  Q
    ||||||||||||| |||||||||||||||||| | | ||||| ||| || |||||||||||||| ||| |||||    
T  5460253 actcaaaatcacaacaataaacttagatgtgtagagtaaaagggaaatagtaaccaatatcaaaataatctcaa 5460180  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 203
Target Start/End: Original strand, 37282503 - 37282554
Alignment:
Q  152 tgaattcctactcaaaatcacaccaataaacttagatgtgtggggcaaaaga 203  Q
    |||||||  ||||||||||||||||||||||||| |||||||| ||||||||    
T  37282503 tgaattcggactcaaaatcacaccaataaacttaaatgtgtggagcaaaaga 37282554  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 918746 - 918699
Alignment:
Q  169 tcacaccaataaacttagatgtgtggggcaaaagagaattattaacca 216  Q
    |||||||||||||||||||||||||| ||||||| ||| || ||||||    
T  918746 tcacaccaataaacttagatgtgtggagcaaaagggaagtagtaacca 918699  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 200
Target Start/End: Original strand, 25700943 - 25700982
Alignment:
Q  161 actcaaaatcacaccaataaacttagatgtgtggggcaaa 200  Q
    |||||||||||||| |||||||||||||||||||| ||||    
T  25700943 actcaaaatcacactaataaacttagatgtgtgggacaaa 25700982  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 201
Target Start/End: Original strand, 45655486 - 45655522
Alignment:
Q  165 aaaatcacaccaataaacttagatgtgtggggcaaaa 201  Q
    ||||||||| |||||||||||||||||||| ||||||    
T  45655486 aaaatcacatcaataaacttagatgtgtggagcaaaa 45655522  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 229
Target Start/End: Original strand, 27305524 - 27305600
Alignment:
Q  152 tgaattcctactcaaaatcacaccaataaacttagatgtgtggggcaaaagagaattattaaccaatatcaaattaac 229  Q
    |||||||  |||||||||||||||||||||||  ||||||||| ||||| || || || |||||||||||||| ||||    
T  27305524 tgaattcggactcaaaatcacaccaataaactatgatgtgtggagcaaagga-aagtagtaaccaatatcaaagtaac 27305600  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 234
Target Start/End: Original strand, 1312882 - 1312950
Alignment:
Q  166 aaatcacaccaataaacttagatgtgtggggcaaaagagaattattaaccaatatcaaattaacctcaa 234  Q
    |||||||||||||||||||| | | |||| ||||||| ||| || | |||||||||||| |||| ||||    
T  1312882 aaatcacaccaataaacttatacgcgtggagcaaaagggaagtagtgaccaatatcaaagtaacatcaa 1312950  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 220
Target Start/End: Complemental strand, 30897765 - 30897697
Alignment:
Q  152 tgaattcctactcaaaatcacaccaataaacttagatgtgtggggcaaaagagaattattaaccaatat 220  Q
    ||||||| |||| ||||||||||||||||||||||||| |||| | ||||| ||| || |||| |||||    
T  30897765 tgaattcgtacttaaaatcacaccaataaacttagatgcgtggagtaaaagggaagtagtaacaaatat 30897697  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 192
Target Start/End: Complemental strand, 8038554 - 8038523
Alignment:
Q  161 actcaaaatcacaccaataaacttagatgtgt 192  Q
    ||||||||||||||||||||||||||||||||    
T  8038554 actcaaaatcacaccaataaacttagatgtgt 8038523  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 199
Target Start/End: Complemental strand, 16767684 - 16767650
Alignment:
Q  165 aaaatcacaccaataaacttagatgtgtggggcaa 199  Q
    |||||||||||||||||||||||||||||| ||||    
T  16767684 aaaatcacaccaataaacttagatgtgtggagcaa 16767650  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 194
Target Start/End: Original strand, 34842434 - 34842463
Alignment:
Q  165 aaaatcacaccaataaacttagatgtgtgg 194  Q
    ||||||||||||||||||||||||||||||    
T  34842434 aaaatcacaccaataaacttagatgtgtgg 34842463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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