View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9711_low_76 (Length: 231)
Name: NF9711_low_76
Description: NF9711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9711_low_76 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 214
Target Start/End: Complemental strand, 3456807 - 3456606
Alignment:
| Q |
13 |
caaaggaaggaagttgagcaaagaaaattggagatacttaaagagaataatcgattcgaggaagagattagttatggcggagacaaacgtccggtttcaa |
112 |
Q |
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| T |
3456807 |
caaaggaaggaagttgagcaaagaaaattggagatacttaaagagaataatcgattcgaggaagagattagttatggcggagacaaacgtccggtttcaa |
3456708 |
T |
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| Q |
113 |
tattggacgatgcttactatacttggcaagatctaccggcggcgataaggaaaagtaatgttgttgttcaaaacaagagaattgaaattgaggctgagta |
212 |
Q |
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| T |
3456707 |
tattggacgatgcttactatacttggcaagatctaccggcggcgataaggaaaagtgatattgttgttcagaacaagagaattgaaattgaggctgagta |
3456608 |
T |
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| Q |
213 |
tg |
214 |
Q |
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|| |
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| T |
3456607 |
tg |
3456606 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 214
Target Start/End: Original strand, 48694156 - 48694207
Alignment:
| Q |
163 |
aaaagtaatgttgttgttcaaaacaagagaattgaaattgaggctgagtatg |
214 |
Q |
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||||||||||||||||| ||||| |||||| |||||||||| || ||||||| |
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| T |
48694156 |
aaaagtaatgttgttgtacaaaataagagagttgaaattgatgccgagtatg |
48694207 |
T |
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