View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9711_low_79 (Length: 228)

Name: NF9711_low_79
Description: NF9711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9711_low_79
NF9711_low_79
[»] chr5 (9 HSPs)
chr5 (1-196)||(1497719-1497917)
chr5 (1-192)||(20665791-20665985)
chr5 (1-193)||(7238834-7239017)
chr5 (1-193)||(7244010-7244193)
chr5 (84-196)||(16745705-16745817)
chr5 (118-224)||(31896778-31896884)
chr5 (95-187)||(17770749-17770840)
chr5 (96-228)||(19948290-19948421)
chr5 (2-66)||(17770646-17770710)
[»] chr3 (17 HSPs)
chr3 (1-196)||(44681523-44681719)
chr3 (1-196)||(779034-779222)
chr3 (1-192)||(44471479-44471687)
chr3 (1-192)||(46893038-46893243)
chr3 (1-196)||(33231028-33231233)
chr3 (75-196)||(2095847-2095971)
chr3 (1-161)||(28550972-28551136)
chr3 (118-228)||(46656126-46656236)
chr3 (1-146)||(26918050-26918204)
chr3 (106-196)||(23659955-23660045)
chr3 (1-66)||(44285992-44286057)
chr3 (91-191)||(54247041-54247141)
chr3 (5-64)||(30553771-30553830)
chr3 (109-166)||(22403729-22403786)
chr3 (93-165)||(47830821-47830893)
chr3 (6-35)||(23659851-23659880)
chr3 (4-62)||(27524402-27524462)
[»] chr7 (16 HSPs)
chr7 (1-192)||(25544739-25544930)
chr7 (1-192)||(45595791-45595984)
chr7 (1-194)||(31136600-31136799)
chr7 (1-188)||(12471263-12471460)
chr7 (84-193)||(2500634-2500743)
chr7 (91-228)||(46994210-46994348)
chr7 (1-162)||(49124673-49124833)
chr7 (100-178)||(31136817-31136895)
chr7 (1-192)||(48071071-48071265)
chr7 (99-196)||(11726889-11726984)
chr7 (5-65)||(12470682-12470742)
chr7 (95-192)||(39571317-39571414)
chr7 (76-147)||(1194873-1194942)
chr7 (101-148)||(43521111-43521158)
chr7 (151-193)||(7348358-7348400)
chr7 (95-193)||(30396861-30396958)
[»] chr8 (11 HSPs)
chr8 (1-191)||(9505491-9505682)
chr8 (1-191)||(20859912-20860103)
chr8 (1-178)||(3767211-3767383)
chr8 (1-191)||(3554947-3555142)
chr8 (1-188)||(32322262-32322463)
chr8 (108-192)||(44222727-44222811)
chr8 (78-191)||(25654299-25654415)
chr8 (91-192)||(34760420-34760521)
chr8 (98-228)||(35949540-35949670)
chr8 (1-65)||(42614782-42614846)
chr8 (1-33)||(17913205-17913237)
[»] chr6 (10 HSPs)
chr6 (1-196)||(9827201-9827400)
chr6 (1-161)||(11846701-11846865)
chr6 (1-192)||(23300878-23301073)
chr6 (1-164)||(26186261-26186428)
chr6 (1-193)||(32613442-32613626)
chr6 (1-188)||(11971872-11972064)
chr6 (1-66)||(7176151-7176216)
chr6 (101-190)||(1209215-1209304)
chr6 (1-103)||(2453749-2453850)
chr6 (1-66)||(5416485-5416550)
[»] scaffold0564 (1 HSPs)
scaffold0564 (1-186)||(6752-6942)
[»] chr2 (18 HSPs)
chr2 (1-193)||(37630789-37630971)
chr2 (89-186)||(33036556-33036653)
chr2 (1-164)||(3919425-3919592)
chr2 (91-228)||(4638832-4638969)
chr2 (1-165)||(22847756-22847932)
chr2 (84-228)||(36009715-36009859)
chr2 (2-61)||(5526685-5526744)
chr2 (118-196)||(30906408-30906485)
chr2 (1-66)||(4241151-4241216)
chr2 (84-192)||(31112202-31112310)
chr2 (1-58)||(30906505-30906563)
chr2 (1-66)||(33036700-33036765)
chr2 (75-192)||(13851797-13851909)
chr2 (1-146)||(10722260-10722411)
chr2 (1-98)||(44018573-44018671)
chr2 (1-66)||(29108882-29108947)
chr2 (108-164)||(38607627-38607683)
chr2 (75-192)||(3689457-3689578)
[»] chr4 (15 HSPs)
chr4 (1-191)||(42141698-42141880)
chr4 (1-192)||(9140545-9140739)
chr4 (5-192)||(19681600-19681788)
chr4 (1-186)||(53392684-53392868)
chr4 (96-228)||(4414093-4414225)
chr4 (1-193)||(13206922-13207112)
chr4 (11-196)||(39838761-39838945)
chr4 (96-179)||(28318805-28318888)
chr4 (100-196)||(23106988-23107084)
chr4 (91-196)||(24427291-24427394)
chr4 (75-186)||(38388533-38388637)
chr4 (1-64)||(3042056-3042118)
chr4 (91-145)||(8057404-8057458)
chr4 (75-155)||(3042133-3042215)
chr4 (121-186)||(8605668-8605733)
[»] chr1 (17 HSPs)
chr1 (1-191)||(8414079-8414273)
chr1 (91-192)||(27319996-27320098)
chr1 (96-186)||(12069780-12069870)
chr1 (96-196)||(18461723-18461823)
chr1 (91-227)||(16584176-16584313)
chr1 (91-192)||(11913587-11913688)
chr1 (1-65)||(11912032-11912096)
chr1 (1-145)||(32678031-32678180)
chr1 (91-196)||(8084818-8084923)
chr1 (95-145)||(4407221-4407271)
chr1 (1-38)||(27320165-27320202)
chr1 (102-166)||(11620657-11620721)
chr1 (109-169)||(44581252-44581312)
chr1 (91-146)||(25787909-25787964)
chr1 (13-56)||(48640864-48640907)
chr1 (15-64)||(4635052-4635101)
chr1 (75-144)||(1160995-1161059)
[»] scaffold0002 (1 HSPs)
scaffold0002 (110-192)||(343907-343989)
[»] scaffold1194 (2 HSPs)
scaffold1194 (3-65)||(2206-2268)
scaffold1194 (123-191)||(2140-2207)
[»] scaffold0590 (1 HSPs)
scaffold0590 (1-37)||(8624-8660)


Alignment Details
Target: chr5 (Bit Score: 133; Significance: 3e-69; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 1497917 - 1497719
Alignment:
Q  1 aaaacaaagttctatgaaatatttgagtatgttgtatagatgaaacacaaatttgtgaaaatatgannnnnnnnattgtattttcaaacaaaccgatcca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||| |    
T  1497917 aaaacaaagttctatgaaatatttgagtatgttgtatagatgaaacacaaatttgtgaaaatatgattttttttattgtattttcaaacaaaccgatcaa 1497818  T
Q  101 ---aaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagatttcattggttcagac 196  Q
       |||||| |||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||    
T  1497817 ccgaaccgatccaaaccgactagtttggttcattttcttttttgaaaaacagaaaaaaccgaaccaatctgaaccgatgaagatttcatggattcagac 1497719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 20665791 - 20665985
Alignment:
Q  1 aaaacaaagttctatgaaatatttgagtatgttgtatagatgaaacacaaatttgtgaaaatatgannnnnnnnattgtattttcaaacaaaccgat--- 97  Q
    |||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||  |        |||||| ||| ||||||| ||||       
T  20665791 aaaacaaagttctatgaaatatttgagtatgttgtatgcatgaaatacaaatttgtgaaaataaaaaaaaattaattgtagtttaaaacaaatcgatcaa 20665890  T
Q  98 ccaaaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagatttcattggttc 192  Q
    || |||| | ||||||| ||| |||||||||||||||||||||||||||    ||||| | ||| || | |||| ||||||||||||||||||||    
T  20665891 ccgaaccaatccaaaccaacttgtttggttcggtttcttttttgaaaaacgacaaaaatcaaacgaaaccgaactgatgaagatttcattggttc 20665985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 7239017 - 7238834
Alignment:
Q  1 aaaacaaagttctatgaaatatttgagtatgtt-gtatagatgaaacacaaatttgtgaaaatatgannnnnnnnattgtattttcaaacaaaccgatcc 99  Q
    ||||||||||||||||||||||||||||||||| ||||  |||||| |||||||||| |||||||||        ||||||||||||| | |||||||||    
T  7239017 aaaacaaagttctatgaaatatttgagtatgtttgtatgcatgaaatacaaatttgttaaaatatgaattttttaattgtattttcaaccgaaccgatcc 7238918  T
Q  100 aaaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagatttcattggttca 193  Q
    |||||      ||||    ||||||||| |||||||||||||||||| |  ||||||  |||||| ||||| |||| |||||||||||||||||    
T  7238917 aaacc------aacc----agtttggtttggtttcttttttgaaaaacattaaaaactaaaccaaactgaatcgataaagatttcattggttca 7238834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 7244193 - 7244010
Alignment:
Q  1 aaaacaaagttctatgaaatatttgagtatgtt-gtatagatgaaacacaaatttgtgaaaatatgannnnnnnnattgtattttcaaacaaaccgatcc 99  Q
    ||||||||||||||||||||||||||||||||| ||||  |||||| |||||||||| |||||||||        ||||||||||||| | |||||||||    
T  7244193 aaaacaaagttctatgaaatatttgagtatgtttgtatgcatgaaatacaaatttgttaaaatatgaattttttaattgtattttcaaccgaaccgatcc 7244094  T
Q  100 aaaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagatttcattggttca 193  Q
    |||||      ||||    ||||||||| |||||||||||||||||| |  ||||||  |||||| ||||| |||| |||||||||||||||||    
T  7244093 aaacc------aacc----agtttggtttggtttcttttttgaaaaacattaaaaactaaaccaaactgaatcgataaagatttcattggttca 7244010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 84 - 196
Target Start/End: Complemental strand, 16745817 - 16745705
Alignment:
Q  84 tcaaacaaaccgatccaaaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagattt 183  Q
    |||| |||||| ||||| ||||||||||||||| ||||||||||||||||||| ||||||||| ||  |||||||||||||||  ||||||||||| |||    
T  16745817 tcaaccaaaccaatccagaccgaaccaaaccgattagtttggttcggtttcttgtttgaaaaacagtgaaaaccgaaccaatccaaaccgatgaaggttt 16745718  T
Q  184 cattggttcagac 196  Q
    |||  ||||||||    
T  16745717 catcagttcagac 16745705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 118 - 224
Target Start/End: Original strand, 31896778 - 31896884
Alignment:
Q  118 tagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagatttcattggttcagacnnnnnnngactgaaaaccaat 217  Q
    |||||||||| |||||||||||||||||| ||  |||||||||||||||  ||||||| ||| |||||| |||||||||       ||||||||||||||    
T  31896778 tagtttggtttggtttcttttttgaaaaacagtgaaaaccgaaccaatccaaaccgataaaggtttcatcggttcagacattttttgactgaaaaccaat 31896877  T
Q  218 ccaaacc 224  Q
    |||||||    
T  31896878 ccaaacc 31896884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 95 - 187
Target Start/End: Original strand, 17770749 - 17770840
Alignment:
Q  95 gatccaaaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagatttcatt 187  Q
    ||||||||||||||||||| | ||||||||||| |||||||||||||||||| || |||  ||||||||| |||| || ||||||||||||||    
T  17770749 gatccaaaccgaaccaaacag-ctagtttggtttggtttcttttttgaaaaacagtaaatcccgaaccaaactgatccaatgaagatttcatt 17770840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 228
Target Start/End: Original strand, 19948290 - 19948421
Alignment:
Q  96 atccaaaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagatttcattggttcaga 195  Q
    ||||||||||||  ||||||| ||||||||||| ||||| |||||| || ||||  |||| ||||||||||  ||  |||||| ||||||| ||||||||    
T  19948290 atccaaaccgaat-aaaccgattagtttggttcagtttcctttttg-aagatagtgaaaatcgaaccaatccaaatagatgaatatttcatcggttcaga 19948387  T
Q  196 c-nnnnnnngactgaaaaccaatccaaaccgaac 228  Q
    |        |||||||||||||||||||||||||    
T  19948388 catttttttgactgaaaaccaatccaaaccgaac 19948421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 17770646 - 17770710
Alignment:
Q  2 aaacaaagttctatgaaatatttgagtatgttgtatagatgaaacacaaatttgtgaaaatatga 66  Q
    |||| |||||| || |||||||||| ||||||| ||  |||| | ||||||||||||||||||||    
T  17770646 aaactaagttccataaaatatttgaatatgttgcatgtatgatatacaaatttgtgaaaatatga 17770710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 44681719 - 44681523
Alignment:
Q  1 aaaacaaagttctatgaaatatttgagtatgttgtatagatgaaacacaaatttgtgaaaatatgannnnnnnn--attgtattttcaaacaaaccgatc 98  Q
    ||||||||||||||||||||| |||||||||||||||  |||||| ||||||||||||||||||||          ||||||||||||||||||||||||    
T  44681719 aaaacaaagttctatgaaatacttgagtatgttgtatgcatgaaatacaaatttgtgaaaatatgatttttttttaattgtattttcaaacaaaccgatc 44681620  T
Q  99 caaaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagatttcattggttcagac 196  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  44681619 caaaccaaaccaaaccgactagtttggttcggtttctttttt-aaaaatagtaaaaaccgaaccaaactgaaccgatgaagatttcattggttcagac 44681523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 779222 - 779034
Alignment:
Q  1 aaaacaaagttctatgaaatatttgagtatgttgtatagatgaaacacaaatttgtgaaaatatgannnnnnnnattgtattttcaaacaaaccgatcca 100  Q
    |||||||||||||||||||||||||||||||||||||  ||| || ||||||||||||||||||||        ||||||||||||||||||||||| ||    
T  779222 aaaacaaagttctatgaaatatttgagtatgttgtatgcatgcaatacaaatttgtgaaaatatgaattttttaattgtattttcaaacaaaccgattca 779123  T
Q  101 aaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagatttcattggttcagac 196  Q
         |||||||||| ||||||||||||||||  ||||||||| || || |||||| |||| || | |||| |||| ||||||||| |||||||||    
T  779122 -----aaccaaaccgcctagtttggttcggtt--ttttttgaataaaagtaaaaactgaactaaaccgaactgatgcagatttcataggttcagac 779034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 44471479 - 44471687
Alignment:
Q  1 aaaacaaagttctatgaaatatttgagtatgttgtatagatgaaacacaaatttgtgaaaatatga---nnnnnnnnattgtattttcaaacaaaccgat 97  Q
    |||||||||||||||||||||||||||||||| ||||  |||||| ||||||||||||||||||||           |||||||||||||||||||||||    
T  44471479 aaaacaaagttctatgaaatatttgagtatgtcgtatgcatgaaatacaaatttgtgaaaatatgattttttttttaattgtattttcaaacaaaccgat 44471578  T
Q  98 ---ccaaaccg-----aaccaaaccgactagtttggttcgg------tttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagattt 183  Q
       || |||||     ||||||||||| |||||||||||||      ||| |||||||||||| || ||||| ||||||||||||||| |||||||||||    
T  44471579 ctaccgaaccgatccaaaccaaaccgattagtttggttcggttttttttttttttttgaaaaacagtaaaaagcgaaccaatctgaactgatgaagattt 44471678  T
Q  184 cattggttc 192  Q
    |||||||||    
T  44471679 cattggttc 44471687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 46893038 - 46893243
Alignment:
Q  1 aaaacaaagttctatgaaatatttgagtatgttgtatagatgaaacacaaatttgtgaaaatatg-annnnnnnnattgtattttcaaaca--------- 90  Q
    |||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||| |        ||||||||||||||||             
T  46893038 aaaacaaagttctatgaaatatttgagtatgttgtatgcatgaaaaacaaatttgtgaaaatatgaatttatttaattgtattttcaaacaaaccaacaa 46893137  T
Q  91 ---aaccgatccaaaccgaaccaaaccgactagtttggttcggtttc-ttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagatttcat 186  Q
       ||||||||||||| ||| ||||||  ||||||||||| |||||| |||||| ||||| || ||||||||||||||    ||||||||||||||| ||    
T  46893138 ccgaaccgatccaaactgaatcaaaccatctagtttggttaggtttctttttttaaaaaacagcaaaaaccgaaccaaatcaaaccgatgaagattttat 46893237  T
Q  187 tggttc 192  Q
    ||||||    
T  46893238 tggttc 46893243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 33231233 - 33231028
Alignment:
Q  1 aaaacaaagttctatgaaatatttgagtatgttgtatagatgaaacacaaatttgtgaaaatatgannnnnnnn--attgtattttcaaacaaaccgatc 98  Q
    |||| ||||||||||||||||||||||||||||||||  |||||| |||||||| ||||||||| |          ||||||||||||||||||||||||    
T  33231233 aaaataaagttctatgaaatatttgagtatgttgtatgcatgaaatacaaatttctgaaaatataatttttttttaattgtattttcaaacaaaccgatc 33231134  T
Q  99 ca-------------aaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagatttca 185  Q
     |             |||| ||||||||| ||||||||||||||||||||||||||||||| || ||||||| ||||     |||| |||||||||||||    
T  33231133 aaccgaaccgatctaaaccaaaccaaaccaactagtttggttcggtttcttttttgaaaaacagtaaaaaccaaacc-----gaactgatgaagatttca 33231039  T
Q  186 ttggttcagac 196  Q
    |||||||||||    
T  33231038 ttggttcagac 33231028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 75 - 196
Target Start/End: Original strand, 2095847 - 2095971
Alignment:
Q  75 attgtattttcaaacaaaccgatcca---aaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaac 171  Q
    |||||||||| ||||||||||||| |   |||| | ||||||||| || ||||||| |||||||||||||||||| || |||||  ||||||||| ||||    
T  2095847 attgtatttttaaacaaaccgatcaaccgaaccaatccaaaccgattaatttggtttggtttcttttttgaaaaacagtaaaaattgaaccaatccgaac 2095946  T
Q  172 cgatgaagatttcattggttcagac 196  Q
    | |||||| ||||||  ||||||||    
T  2095947 caatgaaggtttcatcagttcagac 2095971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 28550972 - 28551136
Alignment:
Q  1 aaaacaaagttctatgaaatatttgagtatgttgtatagatgaaacacaaatttgtgaaaatat-gannnnnnnnattgtattttcaaacaaaccgat-- 97  Q
    |||| ||||||||||||||||||| ||||||||||||  |||||| | |||||| ||||||||| ||        ||| ||| |||||||||| ||||      
T  28550972 aaaataaagttctatgaaatatttaagtatgttgtatgaatgaaatataaatttatgaaaatatggatttttttaattatatgttcaaacaaatcgatca 28551071  T
Q  98 -ccaaaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaac 161  Q
     || |||||| |||||||||||| ||||||| |||||||||||| ||||| || |||||| ||||    
T  28551072 accgaaccgatccaaaccgactaatttggtttggtttcttttttaaaaaacagtaaaaactgaac 28551136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 118 - 228
Target Start/End: Original strand, 46656126 - 46656236
Alignment:
Q  118 tagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagatttcattggttcagacnnnnnnngactgaaaaccaat 217  Q
    |||||||||| |||||||||||||||||| |   |||||||||||||||  ||||||||||| |||||| | ||||||        ||||||||||||||    
T  46656126 tagtttggtttggtttcttttttgaaaaacaatgaaaaccgaaccaatccaaaccgatgaaggtttcatcgtttcagatattttttgactgaaaaccaat 46656225  T
Q  218 ccaaaccgaac 228  Q
    |||||||||||    
T  46656226 ccaaaccgaac 46656236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 26918204 - 26918050
Alignment:
Q  1 aaaacaaagttctatgaaatattt-gagtatgttgtatagatgaaacacaaatttgtgaaaatatgannnnnnnnattgtattttcaaacaaaccgatcc 99  Q
    |||||||| ||| ||||||||||| || ||||||||||| || ||| |||||||||||||| ||||         ||||||||||||||||||||||||     
T  26918204 aaaacaaaattcgatgaaatattttgaatatgttgtatacat-aaatacaaatttgtgaaactatggattttttaattgtattttcaaacaaaccgatca 26918106  T
Q  100 a---------aaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaa 146  Q
    |         |||||||||||||||||||||||  |||||||||||||||||||||    
T  26918105 accaatccaaaaccgaaccaaaccgactagtttaattcggtttcttttttgaaaaa 26918050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 106 - 196
Target Start/End: Original strand, 23659955 - 23660045
Alignment:
Q  106 aaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagatttcattggttcagac 196  Q
    |||||| | ||||||||| ||||||||||||||||  |||| || |||||||||||||| |  ||||||||||||| ||||||| ||||||    
T  23659955 aaccaatctgactagtttagttcggtttcttttttacaaaacagtaaaaaccgaaccaaaccaaaccgatgaagatatcattggctcagac 23660045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 44285992 - 44286057
Alignment:
Q  1 aaaacaaagttctatgaaatatttgagtatgttgtatagatgaaacacaaatttgtgaaaatatga 66  Q
    ||||||||||||||| |||||||||||||||||||||  || ||| |||||||||| |||||||||    
T  44285992 aaaacaaagttctataaaatatttgagtatgttgtatgcataaaatacaaatttgtaaaaatatga 44286057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 191
Target Start/End: Original strand, 54247041 - 54247141
Alignment:
Q  91 aaccgatccaaaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagatttcattggt 190  Q
    |||| ||| ||||||| | ||| ||||||||||| || |||||||||||||||||  || ||||||| ||||||||  |||  |||||||||||||||||    
T  54247041 aaccaatctaaaccgatctaaatcgactagtttgatttggtttcttttttgaaaatcagtaaaaaccaaaccaatccaaactaatgaagatttcattggt 54247140  T
Q  191 t 191  Q
    |    
T  54247141 t 54247141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 30553830 - 30553771
Alignment:
Q  5 caaagttctatgaaatatttgagtatgttgtatagatgaaacacaaatttgtgaaaatat 64  Q
    ||||||| ||||||||| ||||| |||||||||  |||||| ||||||||||||||||||    
T  30553830 caaagttttatgaaatacttgagcatgttgtatgcatgaaatacaaatttgtgaaaatat 30553771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 166
Target Start/End: Complemental strand, 22403786 - 22403729
Alignment:
Q  109 caaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatc 166  Q
    |||||||| |||||||||||| |||||||||| ||||||||  ||||| |||||||||    
T  22403786 caaaccgattagtttggttcgatttcttttttaaaaaatagtcaaaactgaaccaatc 22403729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 165
Target Start/End: Complemental strand, 47830893 - 47830821
Alignment:
Q  93 ccgatccaaaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaat 165  Q
    ||||||||||||||| |||| ||  |||||||||| |||||||||||  ||||| || ||||| |||||||||    
T  47830893 ccgatccaaaccgaatcaaatcggttagtttggtttggtttctttttgtaaaaacagtaaaaatcgaaccaat 47830821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 35
Target Start/End: Original strand, 23659851 - 23659880
Alignment:
Q  6 aaagttctatgaaatatttgagtatgttgt 35  Q
    ||||||||||||||||||||||||||||||    
T  23659851 aaagttctatgaaatatttgagtatgttgt 23659880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 27524402 - 27524462
Alignment:
Q  4 acaaagttctatgaaatatttgagtatgttg--tatagatgaaacacaaatttgtgaaaat 62  Q
    ||||||||| ||||||||||| |||||| ||  |||| |||||| ||||||||||||||||    
T  27524402 acaaagttccatgaaatattttagtatgatgtatatacatgaaatacaaatttgtgaaaat 27524462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 5e-52; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 25544930 - 25544739
Alignment:
Q  1 aaaacaaagttctatgaaatatttgagtatgttgtatagatgaaacacaaatttgtgaaaatatgannnnnnnnattgtattttcaaacaaaccgatcca 100  Q
    ||||||||||| |||||||||||||||||||||||||  |||||| ||||||||||||||||||||        ||||||||||||||||||| |||| |    
T  25544930 aaaacaaagttttatgaaatatttgagtatgttgtatgcatgaaatacaaatttgtgaaaatatgaattttttaattgtattttcaaacaaactgatcta 25544831  T
Q  101 aaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagatttcattggttc 192  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||| || ||||||||||  ||   ||||||||||||||||||| |||||    
T  25544830 aaccaaaccaaaccgactagcttggttcggtttcttttttgaaaaacagcaaaaaccgaattaaatcgaaccgatgaagatttcatgggttc 25544739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 45595791 - 45595984
Alignment:
Q  1 aaaacaaagttctatgaaatatttgagtatgttgtatagatgaaacacaaatttgtgaaaatatgannnnnnnnattgtattttcaaacaaaccgatc-- 98  Q
    |||||||||||||||||| ||||||||||||||||| | |||||  |||||||||||||||||| |        ||||||||||||| ||||||||||      
T  45595791 aaaacaaagttctatgaa-tatttgagtatgttgtagacatgaagtacaaatttgtgaaaatattaattttttaattgtattttcaaccaaaccgatcaa 45595889  T
Q  99 -caaaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagatttcattggttc 192  Q
     |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||| ||| |||||| ||||||||||||||||||||    
T  45595890 ccaaaccgaaccaaaccaactagtttggttcggtttcttttttgaaaaatagtaaaaatcgaatcaaactgaactgatgaagatttcattggttc 45595984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 31136600 - 31136799
Alignment:
Q  1 aaaacaaagttctatgaaatatttgagtatgttgtatagatgaaacacaaatttgtgaaaatatgannnnnnnn---attgtattttcaaacaaaccgat 97  Q
    |||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||           ||| |||||||||||||||||||    
T  31136600 aaaacaaagttctatgaaatatttgagtatgttgtatgcatgaaatacaaatttgtgaaaatatgaatttttattttattttattttcaaacaaaccgat 31136699  T
Q  98 ccaaaccgaaccaaacc-----gactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagatttcattggttc 192  Q
    |  ||||||||||| ||     |||||||||||||||| |||||||||||||||||  |||||| |||| || |||||| ||||||||||||||||||||    
T  31136700 c--aaccgaaccaatccaagcggactagtttggttcggattcttttttgaaaaataataaaaactgaactaaactgaacagatgaagatttcattggttc 31136797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 12471460 - 12471263
Alignment:
Q  1 aaaacaaagttctatgaaatatttgagtatgttgtatagatgaaacacaaatttgtgaaaatatg--annnnnnnnattgtattttcaaaca-------- 90  Q
    ||||||||||| || ||||||||||||| ||||||||| |||||| | |||||| ||||||||||           | ||||||||||||||            
T  12471460 aaaacaaagttataagaaatatttgagtgtgttgtatacatgaaatataaatttctgaaaatatggattttttttaactgtattttcaaacaaatcgacc 12471361  T
Q  91 aaccgatccaaaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagatttcattg 188  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |  ||||||| |||||| ||||||  |||||||||||||||    
T  12471360 aaccgatccaaacgtaaccaaaccgactagtttggttcggtttcttttttgaaaaacaataaaaaccaaaccaaactgaactaatgaagatttcattg 12471263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 84 - 193
Target Start/End: Complemental strand, 2500743 - 2500634
Alignment:
Q  84 tcaaacaaaccgatccaaaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagattt 183  Q
    |||| |||||||||||||  |||||| |||| ||||||||||||||| ||||||||||||||| || ||||||  |||||| | |||| |||||||||||    
T  2500743 tcaaccaaaccgatccaattcgaacccaaccaactagtttggttcgggttcttttttgaaaaacagtaaaaacttaaccaaaccgaactgatgaagattt 2500644  T
Q  184 cattggttca 193  Q
    ||||||||||    
T  2500643 cattggttca 2500634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 91 - 228
Target Start/End: Original strand, 46994210 - 46994348
Alignment:
Q  91 aaccgatccaaaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagatttcattggt 190  Q
    |||| |||||||| |||||||||||| |||||||||| |||||||||||||||||| ||  ||||||||| |||||  ||||||| ||| |||||| |||    
T  46994210 aaccaatccaaactgaaccaaaccgattagtttggtttggtttcttttttgaaaaacagtgaaaaccgaatcaatccaaaccgattaaggtttcatcggt 46994309  T
Q  191 tcagac-nnnnnnngactgaaaaccaatccaaaccgaac 228  Q
    ||||||        |||||||||||||||||||||||||    
T  46994310 tcagacatttttttgactgaaaaccaatccaaaccgaac 46994348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 49124673 - 49124833
Alignment:
Q  1 aaaacaaagttctatgaaatatttgagtatgttgtatagatgaaacacaaatttgtgaaaatatg-annnnnnnnattgtattttcaaacaaaccgatcc 99  Q
    ||||| |||||| ||||||||||||| ||||||||||  ||||||  |||||||||||||||||| |        |||||||||||||||||||  |||     
T  49124673 aaaacgaagttccatgaaatatttgaatatgttgtatgcatgaaatgcaaatttgtgaaaatatggatttttgtaattgtattttcaaacaaactaatc- 49124771  T
Q  100 aaaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaacc 162  Q
     || |||||||||||||||||||||||| |||||| ||||| ||||| || |||||| |||||    
T  49124772 -aatcgaaccaaaccgactagtttggtttggtttcctttttaaaaaacagtaaaaactgaacc 49124833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 100 - 178
Target Start/End: Original strand, 31136817 - 31136895
Alignment:
Q  100 aaaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaa 178  Q
    ||||||| ||||| |||||||||| |||||| |||||||||||||||||| |||||||||||||| |||||||||||||    
T  31136817 aaaccgatccaaatcgactagttttgttcggattcttttttgaaaaatagtaaaaaccgaaccaaactgaaccgatgaa 31136895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 48071071 - 48071265
Alignment:
Q  1 aaaacaaagttctatgaaatatttgagtatgttgtatagatgaaacacaaatttgtgaaaatatgannnnnnnnattgtattttcaaacaaaccgatc-- 98  Q
    ||||||||||||||| |||||||||| ||||| || |  |||||| |||||||||||||||||||          |||||||||||||||||||||||      
T  48071071 aaaacaaagttctat-aaatatttgattatgtagtgtgtatgaaatacaaatttgtgaaaatatggtttttttatttgtattttcaaacaaaccgatcaa 48071169  T
Q  99 -caaaccgaaccaaaccgactagtttggttcggtttctttttt-gaaaaatagaaaaaaccgaaccaatctgaaccgatgaagatttcattggttc 192  Q
     | |||||| | ||| ||| || ||||||||||||||||||||  |||||||| ||||| | ||| || |||| | ||||||||||||||||||||    
T  48071170 tcgaaccgatcgaaatcgattaatttggttcggtttcttttttaaaaaaatagtaaaaatcaaacgaaactgagctgatgaagatttcattggttc 48071265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 99 - 196
Target Start/End: Complemental strand, 11726984 - 11726889
Alignment:
Q  99 caaaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagatttcattggttcagac 196  Q
    ||||| ||||||||| || ||||||||||||||||||||||| ||||| || ||||| ||||||||||  ||||||||||| ||||||||||||||||    
T  11726984 caaacggaaccaaactgattagtttggttcggtttctttttt-aaaaacagcaaaaa-cgaaccaatccaaaccgatgaaggtttcattggttcagac 11726889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 12470742 - 12470682
Alignment:
Q  5 caaagttctatgaaatatttgagtatgttgtatagatgaaacacaaatttgtgaaaatatg 65  Q
    ||||||| || |||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  12470742 caaagttataagaaatatttgagtatgttgtatggatgaaatacaaatttgtgaaaatatg 12470682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 95 - 192
Target Start/End: Complemental strand, 39571414 - 39571317
Alignment:
Q  95 gatccaaaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagatttcattggttc 192  Q
    |||||||||| ||| |||| || ||||||||||| ||||||||||| ||||| || |||||| ||||||| |  ||| ||||||||||||||| ||||    
T  39571414 gatccaaaccaaacaaaactgattagtttggttcagtttcttttttaaaaaacagtaaaaactgaaccaaaccaaactgatgaagatttcatttgttc 39571317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 147
Target Start/End: Original strand, 1194873 - 1194942
Alignment:
Q  76 ttgtattttcaaacaaaccgatccaaaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaat 147  Q
    ||||||||||||||||||| ||  |||  ||||| |||||| ||||||||||||||||| ||||| ||||||    
T  1194873 ttgtattttcaaacaaaccaat--aaattgaaccgaaccgattagtttggttcggtttcattttttaaaaat 1194942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 148
Target Start/End: Complemental strand, 43521158 - 43521111
Alignment:
Q  101 aaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaata 148  Q
    |||||| ||||||||| |||||||||| ||||||||||||| ||||||    
T  43521158 aaccgatccaaaccgaatagtttggtttggtttcttttttgtaaaata 43521111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 193
Target Start/End: Complemental strand, 7348400 - 7348358
Alignment:
Q  151 aaaaaccgaaccaatctgaaccgatgaagatttcattggttca 193  Q
    ||||||||||||||||| ||||||||||| |||||| ||||||    
T  7348400 aaaaaccgaaccaatctaaaccgatgaaggtttcatcggttca 7348358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 193
Target Start/End: Original strand, 30396861 - 30396958
Alignment:
Q  95 gatccaaaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagatttcattggttca 193  Q
    |||| ||||| ||||||||||| ||||||||||||| ||| |||||  |||| ||  |||| | |||||| | |||| |||||||||||||| ||||||    
T  30396861 gatctaaaccaaaccaaaccgattagtttggttcgg-ttcatttttcgaaaagagtgaaaatcaaaccaaaccgaacggatgaagatttcatcggttca 30396958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 8e-48; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 9505491 - 9505682
Alignment:
Q  1 aaaacaaagttctatgaaatatttgagtatgttgtatagatgaaacacaaatttgtgaaaatatgannnnnnnnattgtattttcaaacaaaccgatcca 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||        ||||||||||||| |||||||||| |    
T  9505491 aaaacaaagttctatgaaatatttgagtatgttgtatacatgaaatacaaatttgtgaaaatatgaattttttaattgtattttcaatcaaaccgatcaa 9505590  T
Q  101 ---aaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagatttcattggtt 191  Q
       |||||| ||||||| |||||||||||||| ||  ||||||||||||||| ||||||| |||||| |  |||||||||||||||||||||||    
T  9505591 ttgaaccgatccaaaccaactagtttggttcgatt--ttttttgaaaaatagtaaaaaccaaaccaaaccaaaccgatgaagatttcattggtt 9505682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 20860103 - 20859912
Alignment:
Q  1 aaaacaaagttctatgaaatatttgagtatgttgtatagatgaaacacaaatttgtgaaaatatg-annnnnnnnattgtattttcaaacaaaccgatcc 99  Q
    ||||||||||||||||||||||||||||||| ||||   |||||| ||||||||||||||||||| |        ||||||||||||||| ||| |||||    
T  20860103 aaaacaaagttctatgaaatatttgagtatgatgtaagcatgaaatacaaatttgtgaaaatatggatttttttaattgtattttcaaacgaactgatcc 20860004  T
Q  100 aaaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagatttcattggtt 191  Q
    ||||| || ||||| ||||||||||||| |||||||||||| | ||| || |||||| ||||||| | ||| ||||||||||||||||||||    
T  20860003 aaaccaaatcaaacagactagtttggtttggtttctttttttagaaacagtaaaaactgaaccaaaccgaatcgatgaagatttcattggtt 20859912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 3767383 - 3767211
Alignment:
Q  1 aaaacaaagttctatgaaatatttgagtatgttgtatagatgaaacacaaatttgtgaaaatatgannnnnnnnattgtattttcaaacaaaccgatcca 100  Q
    ||||||||||||||||||||||||||||| |||||||  |||||| ||||||||||||||||||||        |||||||||||||||||||||         
T  3767383 aaaacaaagttctatgaaatatttgagtaagttgtatgcatgaaatacaaatttgtgaaaatatgaattttttaattgtattttcaaacaaaccg----- 3767289  T
Q  101 aaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaa 178  Q
    || | | ||||||||||||||||||||||||||||||||| ||||| || ||||||| |||||| |  ||||||||||    
T  3767288 aatcaatccaaaccgactagtttggttcggtttcttttttaaaaaacagtaaaaaccaaaccaaaccaaaccgatgaa 3767211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 3555142 - 3554947
Alignment:
Q  1 aaaacaaagttctatgaaatatttgagtatgttgtatagatgaaacacaaatttgtgaaaatatgannnnnnnn--attgtattttcaaacaaaccgatc 98  Q
    |||||||||||  ||||||||||| ||||||||| ||  || ||| |||||||| ||||||||||           ||||||||||||||||||||||||    
T  3555142 aaaacaaagtttcatgaaatatttcagtatgttgcatgcataaaatacaaatttatgaaaatatggattttttttaattgtattttcaaacaaaccgatc 3555043  T
Q  99 ca---aaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagatttcattggtt 191  Q
     |   |||||| |||||||||||||||||||| ||||||||||||| |||| || ||||||| ||||||   ||||| ||||||||||||||||||    
T  3555042 aaccgaaccgatccaaaccgactagtttggtttggtttcttttttggaaaacagtaaaaaccaaaccaaaacgaacccatgaagatttcattggtt 3554947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 32322262 - 32322463
Alignment:
Q  1 aaaacaaagttctatgaaatatttgagtatgttgtatagatgaaacacaaatttgtgaaaatat-gannnnnnnnattgtattttcaaacaaaccgatc- 98  Q
    |||| |||||| ||| |||||||||||||||||||||  |||||| |||||||||||||||||| |         ||||||||||||||||||||||||     
T  32322262 aaaataaagttatattaaatatttgagtatgttgtatgcatgaaaaacaaatttgtgaaaatattgttttttttaattgtattttcaaacaaaccgatca 32322361  T
Q  99 ------------caaaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagatttcat 186  Q
                |||||| || ||||||||||| |||| |||| |||||||||| |||||||| || ||||||||||| | |||||||||||||||||||    
T  32322362 attgaaccaatccaaaccaaatcaaaccgactattttgattcgatttctttttttaaaaatagtaacaaccgaaccaaaccgaaccgatgaagatttcat 32322461  T
Q  187 tg 188  Q
    ||    
T  32322462 tg 32322463  T

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Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 108 - 192
Target Start/End: Complemental strand, 44222811 - 44222727
Alignment:
Q  108 ccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagatttcattggttc 192  Q
    |||| |||| ||||||||||||||||||||||||||||| ||  |||||| ||||||||  ||||| | ||| ||||||||||||    
T  44222811 ccaacccgattagtttggttcggtttcttttttgaaaaacagttaaaaccaaaccaatccaaaccggtaaaggtttcattggttc 44222727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 78 - 191
Target Start/End: Complemental strand, 25654415 - 25654299
Alignment:
Q  78 gtattttcaaacaaaccgatcca---aaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccga 174  Q
    ||||||||||| ||||||||| |   |||||| ||||||||| | ||||| || |||| ||||||| ||||| ||  ||||||||||||| |  ||||||    
T  25654415 gtattttcaaataaaccgatcaaccgaaccgatccaaaccgattcgtttgctttggttccttttttaaaaaagagtgaaaaccgaaccaaaccaaaccga 25654316  T
Q  175 tgaagatttcattggtt 191  Q
    |||||||||||| ||||    
T  25654315 tgaagatttcatcggtt 25654299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 192
Target Start/End: Complemental strand, 34760521 - 34760420
Alignment:
Q  91 aaccgatccaaaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagatttcattggt 190  Q
    |||| ||| |||||||||||||| || |||||||| || ||||||||||| |||||  | ||||||  ||| || || |||| | |||||||||||||||    
T  34760521 aaccaatctaaaccgaaccaaactgattagtttggatcagtttcttttttcaaaaaccgtaaaaactaaacgaaactaaaccaacgaagatttcattggt 34760422  T
Q  191 tc 192  Q
    ||    
T  34760421 tc 34760420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 228
Target Start/End: Original strand, 35949540 - 35949670
Alignment:
Q  98 ccaaaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagatttcattggttcagacn 197  Q
    ||||||| | ||||||||| ||||||| |||| |||||||| | |||||  |  ||||||||||||||   ||  ||||||| |||||| |||||||||     
T  35949540 ccaaaccaatccaaaccgattagtttgattcgatttcttttctaaaaaactgtgaaaaccgaaccaattcaaaatgatgaaggtttcatcggttcagaca 35949639  T
Q  198 nnnnnngactgaaaaccaatccaaaccgaac 228  Q
          || ||||||||||||||||||||||    
T  35949640 ttttttgattgaaaaccaatccaaaccgaac 35949670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 42614846 - 42614782
Alignment:
Q  1 aaaacaaagttctatgaaatatttgagtatgttgtatagatgaaacacaaatttgtgaaaatatg 65  Q
    ||||||||||||||||||||| |||||||||||| ||  ||||||  ||||||| ||||| ||||    
T  42614846 aaaacaaagttctatgaaatacttgagtatgttgaatgcatgaaatgcaaatttatgaaattatg 42614782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 17913205 - 17913237
Alignment:
Q  1 aaaacaaagttctatgaaatatttgagtatgtt 33  Q
    |||||||||| ||||||||||||||||||||||    
T  17913205 aaaacaaagtactatgaaatatttgagtatgtt 17913237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 9827201 - 9827400
Alignment:
Q  1 aaaacaaagttctatgaaatatttgagtatgttgtatagatgaaacacaaatttgtgaaaatatga--nnnnnnnnattgtattttcaaacaaaccgat- 97  Q
    |||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||          ||||||||||||||||||  |||     
T  9827201 aaaacaaagttctatgaaatatttgagtatgttgtatgcatgaaatacaaatttgtgaaaatatgatttttttttaattgtattttcaaacaaaatgatc 9827300  T
Q  98 --ccaaaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagatttcattggttcaga 195  Q
      || ||| || |||||| ||||||||||||||||||||||||||||||||  | ||||| |||||  ||| |||||||| || ||||||||||||||||    
T  9827301 aaccgaactgatccaaactgactagtttggttcggtttcttttttgaaaaactgcaaaaatcgaacagatc-gaaccgataaaaatttcattggttcaga 9827399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 11846701 - 11846865
Alignment:
Q  1 aaaacaaagttctatgaaatatttgagtatgttgtatagatgaaacacaaatttgtgaaaatatg-annnnnnnnattgtattttcaaacaaaccgat-- 97  Q
    ||||||||||||||||||||||||||| |||||||||  |||||| ||||||||||||||||||| |        |||||||||||||||||||||||      
T  11846701 aaaacaaagttctatgaaatatttgagcatgttgtatgcatgaaatacaaatttgtgaaaatatgaatttttttaattgtattttcaaacaaaccgatca 11846800  T
Q  98 -ccaaaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaac 161  Q
     || ||| || ||||||||| ||||||| |||| |||||||||| ||||| || |||||||||||    
T  11846801 accgaactgatccaaaccgattagtttgattcgatttcttttttaaaaaacagtaaaaaccgaac 11846865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 23300878 - 23301073
Alignment:
Q  1 aaaacaaagttctatgaaatatttgagtatgttgtatagatgaaacacaaatttgtgaaaatatgannnnnnnnattgtattttcaaacaaaccgatcca 100  Q
    ||||||| ||||||| ||||||||||||||||||| |   ||||| |||||||| ||||||||| |        ||||||||||||||||  |||||| |    
T  23300878 aaaacaaggttctattaaatatttgagtatgttgtttgtttgaaatacaaatttatgaaaatataaatttttcaattgtattttcaaacattccgatcta 23300977  T
Q  101 ---aaccgaaccaaaccgactagtttggttcggtttc-ttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagatttcattggttc 192  Q
       ||||||  |||||||||||||||||||||||||| |||||| |||||||| |||||| ||| ||| ||||||||||||| ||||||| |||||    
T  23300978 cggaaccgatgcaaaccgactagtttggttcggtttcttttttttaaaaatagtaaaaactgaatcaaactgaaccgatgaaaatttcatgggttc 23301073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 26186428 - 26186261
Alignment:
Q  1 aaaacaaagttctatgaaatatttgagtatgttgtatagatgaaacacaaatttgtgaaaatatg-annnnnnnnattgtattttcaaacaaaccgatcc 99  Q
    ||||||||||| |||||||||||||||||||||||||   ||||| |||||||| | |||||||| |        |||||||||| |||||||  ||||     
T  26186428 aaaacaaagttatatgaaatatttgagtatgttgtatgcttgaaatacaaatttttaaaaatatggagttttttaattgtatttttaaacaaattgatca 26186329  T
Q  100 a---aaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaa 164  Q
    |   |||||| |||||| |||||||||||||||||||||||||||||||| || ||||||||||||||    
T  26186328 accgaaccgatccaaactgactagtttggttcggtttcttttttgaaaaacagtaaaaaccgaaccaa 26186261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 32613626 - 32613442
Alignment:
Q  1 aaaacaaagttctatgaaatatttgagtatgttgtatagatgaaacacaaatttgtgaaaatat-gannnnnnnnattgtattttcaaacaaaccgatcc 99  Q
    ||||||||| | ||||||||| |||||||||||||||  |||||| |||||||||| ||||||| ||         |||||||||||||||||||    |    
T  32613626 aaaacaaagatgtatgaaatagttgagtatgttgtatgaatgaaatacaaatttgtaaaaatatagatttttttagttgtattttcaaacaaacc----c 32613531  T
Q  100 aaaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagatttcattggttca 193  Q
     |||||| |||||||||||| | |||||||||||||||||||||||| ||  ||||| |||||     ||||||||||||||||||| ||||||    
T  32613530 gaaccgatccaaaccgactaatatggttcggtttcttttttgaaaaacagtcaaaactgaacc-----gaaccgatgaagatttcatgggttca 32613442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 11971872 - 11972064
Alignment:
Q  1 aaaacaaagttctatgaaatatttgagtatgttgtatagatgaaacacaaatttgtgaaaatatga--nnnnnnnnattgtattttcaaacaaaccgat- 97  Q
    ||||||||||||||||||||||||||| |||||||||  |||||| |||||||||||||||||| |          |||||||||||||||||||||||     
T  11971872 aaaacaaagttctatgaaatatttgagcatgttgtatgcatgaaatacaaatttgtgaaaatataaattttttttaattgtattttcaaacaaaccgatc 11971971  T
Q  98 --ccaaaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagatttcattg 188  Q
      || ||| || ||||||||| |||||||||| | |||||||||  ||||| || |||||| |||| || |  || | |||||||||||||||    
T  11971972 aaccgaactgatccaaaccgattagtttggtttgatttctttttcaaaaaacagtaaaaactgaacgaaaccaaaacaatgaagatttcattg 11972064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 7176216 - 7176151
Alignment:
Q  1 aaaacaaagttctatgaaatatttgagtatgttgtatagatgaaacacaaatttgtgaaaatatga 66  Q
    |||||||||||||||||||||||||||||||||||||  ||||||  |||||||||||||||||||    
T  7176216 aaaacaaagttctatgaaatatttgagtatgttgtatgcatgaaatgcaaatttgtgaaaatatga 7176151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 101 - 190
Target Start/End: Original strand, 1209215 - 1209304
Alignment:
Q  101 aaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagatttcattggt 190  Q
    |||||||||||||||| |||||| ||||| || ||||||||||||| ||  ||||| |||||||  ||||||||| ||||||||||||||    
T  1209215 aaccgaaccaaaccgattagttttgttcgattccttttttgaaaaaaagtgaaaactgaaccaaaatgaaccgataaagatttcattggt 1209304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 2453850 - 2453749
Alignment:
Q  1 aaaacaaagttctatgaaatatttgagtatgttgtatagatgaaacacaaatttgtgaaaatatgannnnnnnnattgtattttcaaacaaaccgatcca 100  Q
    ||||||| || ||||||||||||| ||||||||||||  ||||||||||||| ||||||||||| |        ||||||||||||||||||| ||||||    
T  2453850 aaaacaatgtactatgaaatatttaagtatgttgtatgcatgaaacacaaatatgtgaaaatat-aaattttttattgtattttcaaacaaactgatcca 2453752  T
Q  101 aac 103  Q
    |||    
T  2453751 aac 2453749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 5416485 - 5416550
Alignment:
Q  1 aaaacaaagttctatgaaatatttgagtatgttgtatagatgaaacacaaatttgtgaaaatatga 66  Q
    ||||||||||| ||||||||||| |||||||||||||  |||||| |||||||| |||||||||||    
T  5416485 aaaacaaagttatatgaaatattagagtatgttgtatgcatgaaatacaaatttatgaaaatatga 5416550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 6752 - 6942
Alignment:
Q  1 aaaacaaagttctatgaaatatttgagtatgttgtatagatgaaacacaaatttgtgaaaatatg-annnnnnnnattgtattttcaaacaaaccgatcc 99  Q
    |||||||||||||||||| ||||| |||||||||||    ||||| | ||||||||||||||||| |        |||||||||||||||||| |||||     
T  6752 aaaacaaagttctatgaagtatttcagtatgttgtacgcgtgaaatataaatttgtgaaaatatggatttttttaattgtattttcaaacaaatcgatca 6851  T
Q  100 a---aaccgaaccaaaccgactagtttggttcggtttc-ttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagatttcat 186  Q
    |   |||||| ||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||| | ||||| |||||||||||||    
T  6852 accgaaccgatccaaaccgactagtttggttcggtttctttttttaaaaaatagtaaaaaccgaaccaacccgaacccatgaagatttcat 6942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 37630789 - 37630971
Alignment:
Q  1 aaaacaaagttctatgaaatatttgagtatgttgtatagatgaaacacaaatttgtgaaaatatgannnnnnnnattgtattttcaaacaaaccgatcca 100  Q
    |||||||||||||||||||||||||||||| ||||||  |||||| |||||||||||||| ||           ||||||||||||||||||| ||||      
T  37630789 aaaacaaagttctatgaaatatttgagtattttgtatgcatgaaatacaaatttgtgaaatta---attttttaattgtattttcaaacaaactgatc-- 37630883  T
Q  101 aaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagatttcattggttca 193  Q
         |||||||||||||||||||||| | |||||||||| ||||| || |||||||||||||| |||||| |||||||||||||| ||||||    
T  37630884 -----aaccaaaccgactagtttggtttgatttctttttttaaaaacagtaaaaaccgaaccaaactgaactgatgaagatttcataggttca 37630971  T

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Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 89 - 186
Target Start/End: Complemental strand, 33036653 - 33036556
Alignment:
Q  89 caaaccgatccaaaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagatttcat 186  Q
    |||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||| | |||||||||||||||||||    
T  33036653 caaaccaatccaaaccaaaccaaacagactagtttggttcggtttcttttttgaaaaatagtaaaaatcgaaccaaaccgaaccgatgaagatttcat 33036556  T

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Target: chr2; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 3919592 - 3919425
Alignment:
Q  1 aaaacaaagttctatgaaatatttgagtatgttgtatagatgaaacacaaatttgtgaaaatatgannnnnnnna-ttgtattttcaaacaaaccgatcc 99  Q
    |||||||| ||| || |||||||||||||||||||||| || ||  ||||||||||||||||||||        | |||||||||| ||||||||||||     
T  3919592 aaaacaaatttccataaaatatttgagtatgttgtatacataaactacaaatttgtgaaaatatgaatttttttaattgtattttcgaacaaaccgatca 3919493  T
Q  100 a---aaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaa 164  Q
    |   |||||| |||||||||||| ||| |||||||||||||||||||||| || ||||||||||||||    
T  3919492 accgaaccgatccaaaccgactactttagttcggtttcttttttgaaaaacagtaaaaaccgaaccaa 3919425  T

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Target: chr2; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 91 - 228
Target Start/End: Original strand, 4638832 - 4638969
Alignment:
Q  91 aaccgatccaaaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagatttcattggt 190  Q
    |||| ||||||| ||| ||||||||| || |||||||||||||||||||||||||| ||  ||||| ||||||||| ||||||||||||||||||| |||    
T  4638832 aaccaatccaaatcgagccaaaccgattaatttggttcggtttcttttttgaaaaacagtgaaaactgaaccaatccgaaccgatgaagatttcatcggt 4638931  T
Q  191 tcagacnnnnnnngactgaaaaccaatccaaaccgaac 228  Q
    ||||||       | ||||||| |||||||||||||||    
T  4638932 tcagacattttttggctgaaaatcaatccaaaccgaac 4638969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 22847932 - 22847756
Alignment:
Q  1 aaaacaaagttctatgaaatatttgagtatgttgtatagatgaaacacaaatttgtgaaaatatgannnnnnnnattgtattttcaaacaaaccgatc-- 98  Q
    |||||||||||||||||||||||||||||||||||||  |||||| | ||||||||||||||||||        |||||||||| |||||||||||||      
T  22847932 aaaacaaagttctatgaaatatttgagtatgttgtatgcatgaaataaaaatttgtgaaaatatgaattttta-attgtatttttaaacaaaccgatcaa 22847834  T
Q  99 -----------caaaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaat 165  Q
               |||| | |||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||    
T  22847833 ccaaaccaatccaaatcaaaccaaaccgactagtttggtttggtttcttttttgaaaaacagcaaaaaccgaaccaat 22847756  T

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Target: chr2; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 84 - 228
Target Start/End: Original strand, 36009715 - 36009859
Alignment:
Q  84 tcaaacaaaccgatccaaaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagattt 183  Q
    |||| |||||| ||||||| |||||||||||   ||||||||||||||||||||||||||||| |   |||| ||||||||||  ||||||||||| |||    
T  36009715 tcaaccaaaccaatccaaatcgaaccaaaccagttagtttggttcggtttcttttttgaaaaacaatgaaaatcgaaccaatccaaaccgatgaaggttt 36009814  T
Q  184 cattggttcagacnnnnnnngactgaaaaccaatccaaaccgaac 228  Q
    ||| |||||||||       ||||||||| ||||| |||||||||    
T  36009815 catcggttcagacattttttgactgaaaatcaatctaaaccgaac 36009859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 5526685 - 5526744
Alignment:
Q  2 aaacaaagttctatgaaatatttgagtatgttgtatagatgaaacacaaatttgtgaaaa 61  Q
    ||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||    
T  5526685 aaacaaagttctatgaaatatttgagtatgttgtatgtatgaaatacaaatttgtgaaaa 5526744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 118 - 196
Target Start/End: Complemental strand, 30906485 - 30906408
Alignment:
Q  118 tagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagatttcattggttcagac 196  Q
    ||||||||||| ||||||||| |||||||||  |||||||||||||||| ||| |||||||||||||||| ||||||||    
T  30906485 tagtttggttcagtttcttttatgaaaaatattaaaaaccgaaccaatccgaa-cgatgaagatttcattagttcagac 30906408  T

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Target: chr2; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 4241151 - 4241216
Alignment:
Q  1 aaaacaaagttctatgaaatatttgagtatgttgtatagatgaaacacaaatttgtgaaaatatga 66  Q
    ||||||||||||||||||||||| |||||||||||| | |||||| |||||||| |||||||||||    
T  4241151 aaaacaaagttctatgaaatattcgagtatgttgtagacatgaaatacaaatttttgaaaatatga 4241216  T

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Target: chr2; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 84 - 192
Target Start/End: Original strand, 31112202 - 31112310
Alignment:
Q  84 tcaaacaaaccgatccaaaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagattt 183  Q
    |||| |||||| ||| ||||| ||||||||||| |||||| |||| ||||||||||||||||| ||  |||||||||||||||  |||  |||||| |||    
T  31112202 tcaaccaaaccaatcaaaaccaaaccaaaccgattagttttgttcagtttcttttttgaaaaacagtgaaaaccgaaccaatccaaacaaatgaaggttt 31112301  T
Q  184 cattggttc 192  Q
    ||| |||||    
T  31112302 catcggttc 31112310  T

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Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 30906563 - 30906505
Alignment:
Q  1 aaaacaaagttctatgaaatatttgagtatgttgtatagatg-aaacacaaatttgtga 58  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||    
T  30906563 aaaacaaagttctatgaaatatttgagtatgttgtatacatgaaaatacaaatttgtga 30906505  T

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Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 33036765 - 33036700
Alignment:
Q  1 aaaacaaagttctatgaaatatttgagtatgttgtatagatgaaacacaaatttgtgaaaatatga 66  Q
    ||||||||||| ||| |||||||||||||||||||||  || ||| ||||||||||||||||||||    
T  33036765 aaaacaaagttttataaaatatttgagtatgttgtatgtataaaatacaaatttgtgaaaatatga 33036700  T

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Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 192
Target Start/End: Complemental strand, 13851909 - 13851797
Alignment:
Q  75 attgtattttcaaacaaaccgatccaaaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccga 174  Q
    |||||||||| ||| |||||||||  |||||||||||||||| ||||||||| || ||| |||||   |||||||  ||||||||| |||||  ||||||    
T  13851909 attgtatttttaaataaaccgatc--aaccgaaccaaaccgattagtttggtacgtttttttttt---aaaatagtgaaaaccgaatcaatccaaaccga 13851815  T
Q  175 tgaagatttcattggttc 192  Q
    ||||| |||||| |||||    
T  13851814 tgaaggtttcatcggttc 13851797  T

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Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 10722260 - 10722411
Alignment:
Q  1 aaaacaaagttctatgaaatatttgagtatgttgtatagatgaaacacaaatttgtgaaaatat-gannnnnnnna--ttgtattttcaaacaaaccgat 97  Q
    |||||||| |||||| ||||||||||||| |||||||  |||||| ||||| || ||||||||| ||        |  ||||||||| ||| ||||||||    
T  10722260 aaaacaaaattctatcaaatatttgagtacgttgtatgcatgaaatacaaaattatgaaaatatagatttcttttaatttgtatttttaaataaaccgat 10722359  T
Q  98 cca---aaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaa 146  Q
    | |   ||| || ||||||||||||||||||||||||||||||||| |||||    
T  10722360 caactgaactgatccaaaccgactagtttggttcggtttcttttttaaaaaa 10722411  T

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Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 44018671 - 44018573
Alignment:
Q  1 aaaacaaagttctatgaaatatttgagtatgttgtatagatgaaacacaaatttgtgaaaatatg-annnnnnnnattgtattttcaaacaaaccgatc 98  Q
    ||||||||||| | ||||||||||||||||| |||||  |||||| ||||||||||| ||||||| |        ||||||||||||||||||||||||    
T  44018671 aaaacaaagttatgtgaaatatttgagtatgatgtatgcatgaaatacaaatttgtgtaaatatgaatttttttaattgtattttcaaacaaaccgatc 44018573  T

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Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 29108947 - 29108882
Alignment:
Q  1 aaaacaaagttctatgaaatatttgagtatgttgtatagatgaaacacaaatttgtgaaaatatga 66  Q
    |||||||||||  || |||||||| ||||||||||||  |||||| ||||||||||||||||||||    
T  29108947 aaaacaaagtttcatcaaatatttaagtatgttgtatgcatgaaatacaaatttgtgaaaatatga 29108882  T

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Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 164
Target Start/End: Original strand, 38607627 - 38607683
Alignment:
Q  108 ccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaa 164  Q
    ||||||||| ||||||||||||||||||||||||||||| ||  |||| ||||||||    
T  38607627 ccaaaccgattagtttggttcggtttcttttttgaaaaagagtgaaaatcgaaccaa 38607683  T

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Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 192
Target Start/End: Complemental strand, 3689578 - 3689457
Alignment:
Q  75 attgtattttcaaacaaaccgatc---caaaccgaaccaaaccgactagtttggttcggtttcttttttgaa-aaatagaaaaaaccgaaccaatctgaa 170  Q
    ||||||||||||||||||| ||||   |||||||| |  ||| || ||||||||||| |||||||||||    |||||| |||||||||||||| |  ||    
T  3689578 attgtattttcaaacaaactgatcaaccaaaccgatctgaactgattagtttggttccgtttcttttttttttaaatagtaaaaaccgaaccaaaccaaa 3689479  T
Q  171 ccgatgaagatttcattggttc 192  Q
    || |||||||| ||||||||||    
T  3689478 ccaatgaagatgtcattggttc 3689457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 42141698 - 42141880
Alignment:
Q  1 aaaacaaagttctatgaaatatttgagtatgttgtatagatgaaacacaaatttgtgaaaatatgannnnnnnna-ttgtattttcaaacaaaccgatcc 99  Q
    |||||||||||||||||||||||| |||  |||||||  |||||| ||||||||||||||||||||        | |||||||||||||||||||||||     
T  42141698 aaaacaaagttctatgaaatatttcagt--gttgtatgcatgaaatacaaatttgtgaaaatatgaatttttttaattgtattttcaaacaaaccgatc- 42141794  T
Q  100 aaaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagatttcattggtt 191  Q
          ||||||||| | |||||||||||||||||||||||||||||||| ||||||| || ||| | |||||||| |||||||||| ||||    
T  42141795 ------aaccaaaccaaatagtttggttcggtttcttttttgaaaaatagtaaaaaccaaatcaaacggaaccgataaagatttcatcggtt 42141880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 9140739 - 9140545
Alignment:
Q  1 aaaacaaagttctatgaaatatttgagtatgttgtatagatgaaacacaaatttgtgaaaatat-gannnnnnnnattgtattttcaaacaaaccgatcc 99  Q
    |||| ||||||||||||||||||||||||||||||||   ||||| |||||||| ||||||||| ||        |||||| |||||||||||||| ||     
T  9140739 aaaataaagttctatgaaatatttgagtatgttgtatgcttgaaatacaaatttttgaaaatatagatttttttaattgtaatttcaaacaaaccggtca 9140640  T
Q  100 a---aaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagatttcattggttc 192  Q
    |   ||| || |||||||||||||||||||||||||| |||||| ||||| || ||||||| |||||| |  ||||||||||||||||||||||||    
T  9140639 accgaactgatccaaaccgactagtttggttcggtttttttttt-aaaaacagtaaaaaccaaaccaaaccaaaccgatgaagatttcattggttc 9140545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 5 - 192
Target Start/End: Complemental strand, 19681788 - 19681600
Alignment:
Q  5 caaagttctatgaaatatttgagtatgttgtatagatgaaacacaaatttgtgaaaatatgannnnnnnnattgtattttcaaacaaaccgatc---caa 101  Q
    ||||||| ||||||||||||||||| |||||||   ||||| |||||||||||||||||||         |||||||||||||| ||| |||||   | |    
T  19681788 caaagttttatgaaatatttgagtacgttgtatgcgtgaaatacaaatttgtgaaaatatggattttttaattgtattttcaaa-aaatcgatcatacga 19681690  T
Q  102 accgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagatttcattggttc 192  Q
    ||||| |||||||||||||||||||||||||| |||||| ||||   | |||||| ||||||| |||||||||||||||||||||||||||    
T  19681689 accgatccaaaccgactagtttggttcggtttgtttttttaaaacg-gtaaaaactgaaccaaactgaaccgatgaagatttcattggttc 19681600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 53392868 - 53392684
Alignment:
Q  1 aaaacaaagttctatgaaatatttgagtatgttgtatagatgaaacacaaatttgtgaaaatatgannnnnnnn--attgtattttcaaacaaaccgatc 98  Q
    |||| ||||||||||||||||||||| ||||||||||  |||||| |||||||||||| |||| ||          ||||||||||||||||||||||||    
T  53392868 aaaataaagttctatgaaatatttgaatatgttgtatgcatgaaatacaaatttgtgagaataagatttttttttaattgtattttcaaacaaaccgatc 53392769  T
Q  99 caaaccgaaccaaaccgactagtttggttcggtttctt--ttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagatttcat 186  Q
    ||||||     |||||||||||||||||| ||||||||  |||| ||||| || ||||| ||||||||   |||||||||||||||||||    
T  53392768 caaacc-----aaaccgactagtttggtttggtttcttttttttaaaaaaaagtaaaaatcgaaccaaatcgaaccgatgaagatttcat 53392684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 96 - 228
Target Start/End: Original strand, 4414093 - 4414225
Alignment:
Q  96 atccaaaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagatttcattggttcaga 195  Q
    ||||||||||||||||||| | || |||||| ||||||| ||||||||||| ||  |||||||||||||||  ||||||||||| |||||| ||||||||    
T  4414093 atccaaaccgaaccaaacctattaatttggtgcggtttcatttttgaaaaacagtgaaaaccgaaccaatccaaaccgatgaaggtttcatcggttcaga 4414192  T
Q  196 cnnnnnnngactgaaaaccaatccaaaccgaac 228  Q
    |       ||||||||| |||||||||||||||    
T  4414193 cattttttgactgaaaatcaatccaaaccgaac 4414225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 13207112 - 13206922
Alignment:
Q  1 aaaacaaagttctatgaaatatttgagtatgttgtatagatgaaacacaaatttgtgaaaatatgannnnnnnnattgtattttcaaacaaaccgatcca 100  Q
    ||||||||| || ||||||||||| ||||||||||||  |||||| |||||| ||||||||||           ||||||||||||||||||||||||      
T  13207112 aaaacaaagctccatgaaatatttaagtatgttgtatgcatgaaatacaaatatgtgaaaataaagattttgtaattgtattttcaaacaaaccgatc-- 13207015  T
Q  101 aaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagatttcattggttca 193  Q
    ||||||||||| | |  || ||||||| ||||||| |||| ||||| || ||||||||| |||| | ||||| |||||||||||| |||||||    
T  13207014 aaccgaaccaatctggttaatttggtttggtttctattttaaaaaacagtaaaaaccgatccaaaccgaaccaatgaagatttcactggttca 13206922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 11 - 196
Target Start/End: Complemental strand, 39838945 - 39838761
Alignment:
Q  11 tctatgaaatatttgagtatgttgtatagatgaaacacaaatttgtgaaaatat-gannnnnnnnattgtattttcaaacaaaccg---atccaaaccga 106  Q
    |||||||||||||||| ||||||||||| |||||| |||||||||||||||| |  |        |||||||||||||||||||||   | || ||||||    
T  39838945 tctatgaaatatttgattatgttgtatatatgaaatacaaatttgtgaaaatttaaatttttttaattgtattttcaaacaaaccgacaaaccgaaccga 39838846  T
Q  107 accaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagatttcattggttcagac 196  Q
     |||||| ||||| ||||||| |||||||||||| |||||||| ||||| | | |||     |||||||||| |||||||||||| ||||    
T  39838845 cccaaactgactactttggtttggtttctttttttaaaaatagtaaaaatcaagcca-----aaccgatgaatatttcattggttaagac 39838761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 96 - 179
Target Start/End: Complemental strand, 28318888 - 28318805
Alignment:
Q  96 atccaaaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaag 179  Q
    |||||||||||||| |||||| |||||||||| |||||||||||||||||| |   |||||||||||||||  |||||||||||    
T  28318888 atccaaaccgaacccaaccgattagtttggtttggtttcttttttgaaaaacaatgaaaaccgaaccaatccaaaccgatgaag 28318805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 196
Target Start/End: Complemental strand, 23107084 - 23106988
Alignment:
Q  100 aaaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagatttcattggttcagac 196  Q
    ||||||||||||||||| || ||||||| |||||  ||||||||||| |   |||||||||||||||  ||| ||||||| |||||| |||||||||    
T  23107084 aaaccgaaccaaaccgattaatttggtttggttttctttttgaaaaacattgaaaaccgaaccaatccaaactgatgaaggtttcatcggttcagac 23106988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 91 - 196
Target Start/End: Complemental strand, 24427394 - 24427291
Alignment:
Q  91 aaccgatccaaaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagatttcattggt 190  Q
    |||| ||||||||||||||||||||| ||  | |||| |||||||||||||||||| ||   |||| ||||||| | |||||||||||  |||||| |||    
T  24427394 aaccaatccaaaccgaaccaaaccgatta--tcggtttggtttcttttttgaaaaacagtggaaactgaaccaaaccgaaccgatgaatgtttcatcggt 24427297  T
Q  191 tcagac 196  Q
    ||||||    
T  24427296 tcagac 24427291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 75 - 186
Target Start/End: Original strand, 38388533 - 38388637
Alignment:
Q  75 attgtattttcaaacaaaccgatccaaaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccga 174  Q
    |||||||||||||| ||||| |||  |||||||||||||||| | |||| |||||||| ||||||| ||||| ||  |||||| |||||     ||||||    
T  38388533 attgtattttcaaataaaccaatc--aaccgaaccaaaccgatttgtttcgttcggttacttttttaaaaaagagtgaaaaccaaacca-----aaccga 38388625  T
Q  175 tgaagatttcat 186  Q
    ||||||||||||    
T  38388626 tgaagatttcat 38388637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 3042056 - 3042118
Alignment:
Q  1 aaaacaaagttctatgaaatatttgagtatgttgtatagatgaaacacaaatttgtgaaaatat 64  Q
    |||||||| ||| ||||||||||||||||||||||||| | |||| |||||||||| |||||||    
T  3042056 aaaacaaatttccatgaaatatttgagtatgttgtatata-gaaatacaaatttgtaaaaatat 3042118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 91 - 145
Target Start/End: Original strand, 8057404 - 8057458
Alignment:
Q  91 aaccgatccaaaccgaaccaaaccgactagtttggttcggtttcttttttgaaaa 145  Q
    ||||||||||| | |||| ||||||| ||||||||||||||| ||||||||||||    
T  8057404 aaccgatccaacctgaacaaaaccgattagtttggttcggttccttttttgaaaa 8057458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 155
Target Start/End: Original strand, 3042133 - 3042215
Alignment:
Q  75 attgtattttcaaacaaaccgatc---caaaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaa 155  Q
    ||||||||||||||||||| ||||   ||||| || | |||||| |||||||| ||||||||||||||| ||||| || |||||    
T  3042133 attgtattttcaaacaaac-gatcaaccaaactgatctaaaccggctagtttgattcggtttcttttttaaaaaacagtaaaaa 3042215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 186
Target Start/End: Complemental strand, 8605733 - 8605668
Alignment:
Q  121 tttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagatttcat 186  Q
    ||||||||| |||||||||||||||| ||  |||||| ||||||||| |||| | ||||| |||||    
T  8605733 tttggttcgatttcttttttgaaaaagagtgaaaaccaaaccaatctaaaccaaggaagaattcat 8605668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 8414273 - 8414079
Alignment:
Q  1 aaaacaaagttctatgaaatatttgagtatgttgtatagatgaaacacaaatttgtgaaaatat-gannnnnnnnattgtattttcaaacaaaccgat-- 97  Q
    ||||||||||||||||||||||||||  |||||||||  |||||| |||||||||||||||||| ||        || ||||||||||||||||| ||      
T  8414273 aaaacaaagttctatgaaatatttgaacatgttgtatgtatgaaatacaaatttgtgaaaatatggatcattttaatcgtattttcaaacaaaccaataa 8414174  T
Q  98 -ccaaaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagatttcattggtt 191  Q
     || ||||||  |||||| |||||||||||||| |||||||||| ||||| |  ||||| ||| |||| |  |||| |||||||||| |||||||    
T  8414173 accgaaccgattcaaaccaactagtttggttcgatttcttttttaaaaaacaataaaaatcgagccaaaccaaaccaatgaagatttaattggtt 8414079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 91 - 192
Target Start/End: Complemental strand, 27320098 - 27319996
Alignment:
Q  91 aaccgatccaaaccgaaccaaaccga-ctagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagatttcattgg 189  Q
    ||||||||||||| |||||||||| | |||||||||||||||||||||||| ||||| |  |||||| ||||||| | ||||||||||||||||||| ||    
T  27320098 aaccgatccaaactgaaccaaacccagctagtttggttcggtttcttttttaaaaaacaataaaaactgaaccaaaccgaaccgatgaagatttcatagg 27319999  T
Q  190 ttc 192  Q
    |||    
T  27319998 ttc 27319996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 96 - 186
Target Start/End: Complemental strand, 12069870 - 12069780
Alignment:
Q  96 atccaaaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagatttcat 186  Q
    |||||||| ||| |||||||| || |||||||||||| ||||||||||||| ||  ||||||||||||||| |||||||||||| ||||||    
T  12069870 atccaaacggaatcaaaccgattaatttggttcggttacttttttgaaaaacagtgaaaaccgaaccaatccgaaccgatgaaggtttcat 12069780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 96 - 196
Target Start/End: Original strand, 18461723 - 18461823
Alignment:
Q  96 atccaaaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagatttcattggttcaga 195  Q
    ||||||||||||||||| ||| |||||||||||||||| |||||||||||| ||  ||||  |||||||||  || |||||||| |||||| ||||||||    
T  18461723 atccaaaccgaaccaaatcgattagtttggttcggttttttttttgaaaaacagtgaaaattgaaccaatccaaatcgatgaaggtttcatcggttcaga 18461822  T
Q  196 c 196  Q
    |    
T  18461823 c 18461823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 91 - 227
Target Start/End: Complemental strand, 16584313 - 16584176
Alignment:
Q  91 aaccgatccaaaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagatttcattggt 190  Q
    |||| ||||||  ||||| ||||||| || ||||||||| |||||||||||||||| ||  |||| ||||||||||  ||||||||||| |||||| | |    
T  16584313 aaccaatccaattcgaactaaaccgattaatttggttcgatttcttttttgaaaaacagtgaaaatcgaaccaatccaaaccgatgaaggtttcatcgat 16584214  T
Q  191 tcagac-nnnnnnngactgaaaaccaatccaaaccgaa 227  Q
    ||||||        ||||||||||||||||||||||||    
T  16584213 tcagacttttttttgactgaaaaccaatccaaaccgaa 16584176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 91 - 192
Target Start/End: Original strand, 11913587 - 11913688
Alignment:
Q  91 aaccgatccaaaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagatttcattggt 190  Q
    ||||||| |||||| ||| ||||||||||  |||||| | |||||||||| ||| | || ||||| |||||||| | ||||||||||||||||||| |||    
T  11913587 aaccgattcaaaccaaactaaaccgactaacttggtttgttttctttttttaaagacagtaaaaatcgaaccaaaccgaaccgatgaagatttcataggt 11913686  T
Q  191 tc 192  Q
    ||    
T  11913687 tc 11913688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 11912032 - 11912096
Alignment:
Q  1 aaaacaaagttctatgaaatatttgagtatgttgtatagatgaaacacaaatttgtgaaaatatg 65  Q
    |||| |||||||||||||||| |||| ||||||||||  |||||| |||||||||||||||||||    
T  11912032 aaaataaagttctatgaaatacttgaatatgttgtatgcatgaaatacaaatttgtgaaaatatg 11912096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 32678180 - 32678031
Alignment:
Q  1 aaaacaaagttctatgaaatatttgagtatg-ttgtatagatgaaacacaaatttgtgaaaatat-gannnnnnnnattgtattttcaaacaaaccgat- 97  Q
    ||||||||||||||||||||||||||| ||| ||||||  |||||| |||||||| ||||||||| ||        ||||||||||  |||||| ||||     
T  32678180 aaaacaaagttctatgaaatatttgagcatgtttgtatgcatgaaatacaaatttatgaaaatatagatttttttaattgtattttagaacaaatcgatc 32678081  T
Q  98 --ccaaaccgaaccaaaccgactagtttggttcggtttcttttttgaaaa 145  Q
      ||||||||| |||||||||||| ||| ||||  |||||||||| ||||    
T  32678080 aaccaaaccgatccaaaccgactaatttagttcaatttctttttttaaaa 32678031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 196
Target Start/End: Original strand, 8084818 - 8084923
Alignment:
Q  91 aaccgatccaaaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagatttcattggt 190  Q
    |||| |||||||||||||  |||||| ||| ||||||| ||||||||||||||||| ||  |||| |||||||||   |||| |||||| ||||||  ||    
T  8084818 aaccaatccaaaccgaactcaaccgattagcttggttcagtttcttttttgaaaaacagtgaaaatcgaaccaatacaaaccaatgaaggtttcatcagt 8084917  T
Q  191 tcagac 196  Q
    ||||||    
T  8084918 tcagac 8084923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 95 - 145
Target Start/End: Complemental strand, 4407271 - 4407221
Alignment:
Q  95 gatccaaaccgaaccaaaccgactagtttggttcggtttcttttttgaaaa 145  Q
    ||||||||||||| |||||||| ||||||||||||||| |||||| |||||    
T  4407271 gatccaaaccgaatcaaaccgattagtttggttcggttcctttttagaaaa 4407221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 27320202 - 27320165
Alignment:
Q  1 aaaacaaagttctatgaaatatttgagtatgttgtata 38  Q
    |||||||||||| |||||||||||||||||||||||||    
T  27320202 aaaacaaagttccatgaaatatttgagtatgttgtata 27320165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 11620657 - 11620721
Alignment:
Q  102 accgaaccaaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatc 166  Q
    ||||| ||||||||| || ||||||||||||| |||||| ||||| ||  |||||||||||||||    
T  11620657 accgatccaaaccgattaatttggttcggtttattttttaaaaaacagtgaaaaccgaaccaatc 11620721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 169
Target Start/End: Complemental strand, 44581312 - 44581252
Alignment:
Q  109 caaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctga 169  Q
    |||||||| |||||||||||| |||| ||||| |||||||| ||||||| |||||| ||||    
T  44581312 caaaccgattagtttggttcgatttcattttttaaaaatagtaaaaaccaaaccaaactga 44581252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 146
Target Start/End: Original strand, 25787909 - 25787964
Alignment:
Q  91 aaccgatccaaaccgaaccaaaccgactagtttggttcggtttcttttttgaaaaa 146  Q
    |||| ||||||||| || |||||||| ||| |||||||||||||||||| ||||||    
T  25787909 aaccaatccaaaccaaagcaaaccgattagcttggttcggtttctttttcgaaaaa 25787964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 48640907 - 48640864
Alignment:
Q  13 tatgaaatatttgagtatgttgtatagatgaaacacaaatttgt 56  Q
    |||||||| ||||||||||||||||  |||||||||||||||||    
T  48640907 tatgaaatgtttgagtatgttgtatgcatgaaacacaaatttgt 48640864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 4635101 - 4635052
Alignment:
Q  15 tgaaatatttgagtatgttgtatagatgaaacacaaatttgtgaaaatat 64  Q
    ||||||||||||||||||||||   |||||||||||||| || |||||||    
T  4635101 tgaaatatttgagtatgttgtaggaatgaaacacaaattcgtaaaaatat 4635052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 144
Target Start/End: Complemental strand, 1161059 - 1160995
Alignment:
Q  75 attgtattttcaaacaaaccgatccaaaccgaaccaaaccgactagtttggttcggtttcttttttgaaa 144  Q
    |||||||||| ||| |||||| ||  |||||||||||||| |   |||||||||||||||||||||||||    
T  1161059 attgtatttttaaataaaccggtc--aaccgaaccaaaccaa---gtttggttcggtttcttttttgaaa 1160995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 110 - 192
Target Start/End: Complemental strand, 343989 - 343907
Alignment:
Q  110 aaaccgactagtttggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagatttcattggttc 192  Q
    |||||||||||||||||| || |||||||||||||||||| ||||||| |||||| | |||| |||||| |||||||||||||    
T  343989 aaaccgactagtttggtttgggttcttttttgaaaaatagtaaaaaccaaaccaaaccgaactgatgaatatttcattggttc 343907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1194 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold1194
Description:

Target: scaffold1194; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 2268 - 2206
Alignment:
Q  3 aacaaagttctatgaaatatttgagtatgttgtatagatgaaacacaaatttgtgaaaatatg 65  Q
    |||| ||||||| ||||||||||| ||||||||||| | |||| |||||||||||||||||||    
T  2268 aacagagttctacgaaatatttgaatatgttgtatataagaaatacaaatttgtgaaaatatg 2206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1194; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 191
Target Start/End: Complemental strand, 2207 - 2140
Alignment:
Q  123 tggttcggtttcttttttgaaaaatagaaaaaaccgaaccaatctgaaccgatgaagatttcattggtt 191  Q
    |||||||||||||||||||||||| || ||||||| || |||||  |   |||||||||||||||||||    
T  2207 tggttcggtttcttttttgaaaaa-agtaaaaaccaaatcaatccaagttgatgaagatttcattggtt 2140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 8624 - 8660
Alignment:
Q  1 aaaacaaagttctatgaaatatttgagtatgttgtat 37  Q
    ||||||||||||||||||||||||||||||| |||||    
T  8624 aaaacaaagttctatgaaatatttgagtatggtgtat 8660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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