View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9711_low_8 (Length: 458)
Name: NF9711_low_8
Description: NF9711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9711_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 79 - 361
Target Start/End: Original strand, 49986145 - 49986425
Alignment:
| Q |
79 |
tctccagtccacgcattcatgcaataaacacattagtggcatttggatagggattggacggtgcaaaaagaaatcatattttgattttattactcttaaa |
178 |
Q |
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| T |
49986145 |
tctccagtccacgcattcatgcaataaacacattagtggcatttggatagggattggacggtgcaaaaagaaatcatattttgattttattactcttaaa |
49986244 |
T |
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| Q |
179 |
tgccaagcttgagatctgcaccatgccaccatccaatctcgatccaatcatccaacggccaacgacgtgattgcagcaatccaaatccgttgcatactct |
278 |
Q |
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| T |
49986245 |
tgccaagcttgagatctgcaccatgccaccatccaatctcgatccaatcatccaacggccaacgatgtgattgcagcaatccaaatgcgttgcatactct |
49986344 |
T |
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| Q |
279 |
caggcatatgttgaattatttggtggtcactagataccttttatgctcatggttcatgcattctaaaggtgacatttgcatca |
361 |
Q |
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| T |
49986345 |
caggc--atgttgaattatttggtggtcactagataccttttatgctcatggttcatgcattctaaaggtgacatttgcatca |
49986425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 49986016 - 49986096
Alignment:
| Q |
1 |
ataaaacatgctgccttgtattattttgtctcctgtcaaatgctagtgttacatcttcactttccttggccctcactttct |
81 |
Q |
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| T |
49986016 |
ataaaacatgctgccttgtagcattttgtctgctgtcaaatgctagtgttacatcttcactttccttggccctcactttct |
49986096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 402 - 440
Target Start/End: Original strand, 49986424 - 49986462
Alignment:
| Q |
402 |
catatactttcactttcatacacctaagaagtggtgtgt |
440 |
Q |
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| T |
49986424 |
catatactttcactttcatacacctaagaagtggtgtgt |
49986462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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