View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9711_low_81 (Length: 228)
Name: NF9711_low_81
Description: NF9711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9711_low_81 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 6 - 228
Target Start/End: Complemental strand, 13737540 - 13737317
Alignment:
| Q |
6 |
aatcaccacacattatgtgattcttgatgnnnnnnnnagccaaaatcattatatttcaaaccttttcaaacatcaaatataagctaatgttgcatttcta |
105 |
Q |
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| T |
13737540 |
aatcaccacacattatgtgattcttgatatattttttagccaaaatcatcacatttcaaaccttttcaaacatcaaatataggttaatgttgcatttcta |
13737441 |
T |
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| Q |
106 |
caattgatcgttcttcaatttannnnnnn-cctggttgttgaacgcattcgaattatataagccgaacttgattttcatcttttcaggttatataattcg |
204 |
Q |
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| T |
13737440 |
cagttgattgttcttcaatttattttttttcctagttgttgaacacattcagattatataagccgaacttgattttcatctttccaggttatataattcg |
13737341 |
T |
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| Q |
205 |
aaccgtttgagacatgctgaaaac |
228 |
Q |
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| T |
13737340 |
aaccgtttgagatatgctgaaaac |
13737317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 135 - 228
Target Start/End: Complemental strand, 13736261 - 13736168
Alignment:
| Q |
135 |
cctggttgttgaacgcattcgaattatataagccgaacttgattttcatcttttcaggttatataattcgaaccgtttgagacatgctgaaaac |
228 |
Q |
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| T |
13736261 |
cctggttgttgaacacattcagattatataagtcgaacttaattttcatctttccaggatatataattcgaaccgtttgagatatgctgaaaac |
13736168 |
T |
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