View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9711_low_82 (Length: 227)
Name: NF9711_low_82
Description: NF9711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9711_low_82 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 8e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 8 - 227
Target Start/End: Original strand, 11029192 - 11029411
Alignment:
| Q |
8 |
ggaaccacaagttacataatatgtcgacacatatacaaacacgtcacattatacaatatgccacacacaaatcataagcatgcatataaggcaagtcaca |
107 |
Q |
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| T |
11029192 |
ggaaccacaagttacataatatgccgacacacatacaaacacgtcacattatacaatatgccacacacaaatcacaagcatgcatataaggcaagtcaca |
11029291 |
T |
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| Q |
108 |
agcacacatataggtggggattagcatggaaagttaatattaatcattagatcaggtaaagaacacaatcatatttacactcttaatactagannnnnnn |
207 |
Q |
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| T |
11029292 |
agcaggcatataggtggggattagcatggaaagttaatgttaaccattagatcaggtaaagaacacaatcgtatttacactcttaatactagattttttt |
11029391 |
T |
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| Q |
208 |
ngtcaccatctctctccttc |
227 |
Q |
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| T |
11029392 |
tgtcaccatctctctccttc |
11029411 |
T |
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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 190
Target Start/End: Complemental strand, 11029845 - 11029789
Alignment:
| Q |
135 |
ggaaagttaatattaatcattagatcaggtaaagaacacaatcatatt-tacactct |
190 |
Q |
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||||||| ||||||| |||||||||| ||||||||||||||| |||| |||||||| |
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| T |
11029845 |
ggaaagtaaatattagacattagatcaagtaaagaacacaatcttattatacactct |
11029789 |
T |
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