View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9711_low_83 (Length: 227)
Name: NF9711_low_83
Description: NF9711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9711_low_83 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 43998536 - 43998315
Alignment:
| Q |
1 |
ttaagaagggtgtagagcaaggtcctcaggtatttttatattaagttaactttattactattgtaacgttaccttataggtctatattccttgtctcann |
100 |
Q |
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| T |
43998536 |
ttaagaagggtgtagagcaaggtcctcaggtatttttatattaagttaactttattactattgtaacgttactttataggtctatattccttgtctcatt |
43998437 |
T |
|
| Q |
101 |
nnnnnnnnnnnnnnctagtgtttattcgactaaccttttcatgggaaaaagctaatgtttgacagaacaacacattcttgatcatactatgatttaacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43998436 |
tttctttttcttttctagtgtttattcgactaaccttttcatgggaaaaagctaatgtttgacagaacaacacattcttgatcatactatgatttaacaa |
43998337 |
T |
|
| Q |
201 |
cataacactgttctgtgctcct |
222 |
Q |
| |
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|||||||||||| |||| |||| |
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| T |
43998336 |
cataacactgttttgtggtcct |
43998315 |
T |
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