View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9711_low_84 (Length: 227)
Name: NF9711_low_84
Description: NF9711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9711_low_84 |
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| [»] scaffold0040 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 9e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 51195316 - 51195127
Alignment:
| Q |
18 |
agacaatcaattcatgcagagaattttttataaacatcaattattttttataaatacataccacaaacatcaattgaacaagacaaccattcaaaaagac |
117 |
Q |
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| T |
51195316 |
agacaatcaattcatgcagacaattttttataaacatcaattattttttataaatacataccacaaacatcaattgaacaagacaaccattcaaaaagac |
51195217 |
T |
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| Q |
118 |
ataaataaatcaaatgaacaagacaatattaggtttgttgagacaattccaatgggtaagttgtgttcttgattaagaggaatggtaggg |
207 |
Q |
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| T |
51195216 |
ataaataaatcaactgaacaagacaatattagatttgttgagacaatttcaatgggtaagttgtgttcttgattaagaggaatggtaggg |
51195127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 20 - 203
Target Start/End: Complemental strand, 43039439 - 43039258
Alignment:
| Q |
20 |
acaatcaattcatgcagagaattttttataaacatcaattattttttataaatacataccacaaacatcaattgaacaagacaaccattcaaaaagacat |
119 |
Q |
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|||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
43039439 |
acaatcaattcatgcagacaattttttataaacatcacttatttt--ataaatacataccacaaacatcaattgaacaagacaatcattcaaaaagacat |
43039342 |
T |
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| Q |
120 |
aaataaatcaaatgaacaagacaatattaggtttgttgagacaattccaatgggtaagttgtgttcttgattaagaggaatggt |
203 |
Q |
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| T |
43039341 |
aaataaatcaactgaacaagacaatattaggtttgttgagacaatttcaatgggtaagttgtgttcttgattaagaggaatggt |
43039258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 20 - 207
Target Start/End: Original strand, 52694085 - 52694272
Alignment:
| Q |
20 |
acaatcaattcatgcagagaatttttt--ataaacatcaattattttttataaatacataccacaaacatcaattgaacaagacaaccattcaaaaagac |
117 |
Q |
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| T |
52694085 |
acaatcaattcatgcagacaattttttttataaacatcacttatttt--ataaatacataccacaaacatcaattgaacaagacaaccattcaaaaagac |
52694182 |
T |
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| Q |
118 |
ataaataaatcaaatgaacaagacaatattaggtttgttgagacaattccaatgggtaagttgtgttcttgattaagaggaatggtaggg |
207 |
Q |
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| T |
52694183 |
ataaataaatcaactgaacaagacaatattagatttgttgagacaatttcaatgggtaagttgtgttcttgattaagaggaatggtaggg |
52694272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 20 - 207
Target Start/End: Complemental strand, 22631010 - 22630822
Alignment:
| Q |
20 |
acaatcaattcatgcagagaatttttta-taaacatcaattattttttataaatacataccacaaacatcaattgaacaagacaaccattcaaaaagaca |
118 |
Q |
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|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
22631010 |
acaatcaattcatgcagacaatttttttgtaaacatcaattattttttataaatacataccacaaacatcaattgaacaagaaaaccattcaaaaagaca |
22630911 |
T |
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| Q |
119 |
taaataaatcaaatgaacaagacaatattaggtttgttgagacaattccaatgggtaagttgtgttcttgattaagaggaatggtaggg |
207 |
Q |
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|||||||||||| | |||||||||||||| |||||||| ||||| || |||| | |||||||||||||||||||||||||||||||||| |
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| T |
22630910 |
taaataaatcaactcaacaagacaatattgggtttgttaagacagtttcaatagataagttgtgttcttgattaagaggaatggtaggg |
22630822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 100
Target Start/End: Original strand, 2704465 - 2704518
Alignment:
| Q |
49 |
aaacatcaattattttttataaatac--ataccacaaacatcaattgaacaaga |
100 |
Q |
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| T |
2704465 |
aaacatcaattattttttatgaacaggaataccacaaacatcaattgaacaaga |
2704518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 20 - 165
Target Start/End: Complemental strand, 18016139 - 18015994
Alignment:
| Q |
20 |
acaatcaattcatgcagagaattttttataaacatcaattattttttataaatacataccacaaacatcaattgaacaagacaaccattcaaaaagacat |
119 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
18016139 |
acaatcaattcatgcagacaattttttataaacatcaattattttttataaatacataccacaaacatcaattgaacaagaccaccattcaaaaagacat |
18016040 |
T |
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| Q |
120 |
aaataaatcaaatgaacaagacaatattaggtttgttgagacaatt |
165 |
Q |
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| T |
18016039 |
aaataaatcaactgaacaagacaatattaggtttgttgagacaatt |
18015994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 100
Target Start/End: Original strand, 68559 - 68612
Alignment:
| Q |
49 |
aaacatcaattattttttataaatac--ataccacaaacatcaattgaacaaga |
100 |
Q |
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|||||||||||||||||||| || | |||||||||||||||||||||||||| |
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| T |
68559 |
aaacatcaattattttttatgaacaggaataccacaaacatcaattgaacaaga |
68612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 100
Target Start/End: Complemental strand, 7252900 - 7252847
Alignment:
| Q |
49 |
aaacatcaattattttttataaatac--ataccacaaacatcaattgaacaaga |
100 |
Q |
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|||||||||||||||||||| || | |||||||||||||||||||||||||| |
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| T |
7252900 |
aaacatcaattattttttatgaacaggaataccacaaacatcaattgaacaaga |
7252847 |
T |
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