View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9711_low_87 (Length: 221)
Name: NF9711_low_87
Description: NF9711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9711_low_87 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 41141455 - 41141680
Alignment:
| Q |
1 |
attataagttaccggaacagagaacatactttggtaggattatcaccataattcttaacagcaataggaactacgtctcggctgagtcccatggctatat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41141455 |
attataagttaccggaacagagaacatactttggtaggattatcaccataattcttaacagcaataggaactacgtctcggctgagtcccatggctatat |
41141554 |
T |
|
| Q |
101 |
atttgttcacaattggatctgcagtagtaacctgcaaatatagtttcattttacaccatatgagttgg-----aaacaacagaagaattttatctataca |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
41141555 |
atttgttcacaattggatctgcagtagtaacctgcaaatatagtttcattttacaccatatgagttggaaaccaaacaacagaagaattttatctataca |
41141654 |
T |
|
| Q |
196 |
cagaaaattaatgtactaaacatgaa |
221 |
Q |
| |
|
|||||||||||| |||||||||||| |
|
|
| T |
41141655 |
cagaaaattaatacactaaacatgaa |
41141680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University