View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9711_low_88 (Length: 220)
Name: NF9711_low_88
Description: NF9711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9711_low_88 |
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Alignment Details
Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 144 - 206
Target Start/End: Original strand, 4116235 - 4116297
Alignment:
| Q |
144 |
gctgccttaatctccatatccttcttaagcacaattcatatttccctcatggcctatctctgc |
206 |
Q |
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| T |
4116235 |
gctgccttaatctccatatccttcttaagcacaatttatatttccctcatggcctatctctgc |
4116297 |
T |
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Target: chr1; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 4116114 - 4116175
Alignment:
| Q |
19 |
aaattgacacgttgaattagacttatttaccaaatttggtggataagctcaatgttctgcat |
80 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4116114 |
aaattgacacattgaattagacttatttaccaaatttggtggataagctcaatgttctgcat |
4116175 |
T |
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