View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9711_low_91 (Length: 216)

Name: NF9711_low_91
Description: NF9711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9711_low_91
NF9711_low_91
[»] chr4 (15 HSPs)
chr4 (1-200)||(3811999-3812198)
chr4 (1-200)||(3821572-3821771)
chr4 (1-200)||(4011787-4011986)
chr4 (2-200)||(3952900-3953096)
chr4 (1-200)||(4003308-4003507)
chr4 (3-200)||(4026546-4026743)
chr4 (1-200)||(3915856-3916055)
chr4 (1-200)||(3926850-3927049)
chr4 (1-130)||(4220810-4220939)
chr4 (1-200)||(3988197-3988396)
chr4 (2-161)||(4019585-4019744)
chr4 (46-200)||(3962292-3962446)
chr4 (3-130)||(3792676-3792803)
chr4 (3-129)||(3825829-3825955)
chr4 (46-107)||(4318238-4318299)
[»] chr5 (1 HSPs)
chr5 (2-200)||(13399150-13399348)
[»] chr8 (2 HSPs)
chr8 (3-85)||(7069956-7070038)
chr8 (3-86)||(7087022-7087105)


Alignment Details
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 3811999 - 3812198
Alignment:
Q  1 tgtgaagaagcatagttttctgagaatatgaccgatgaaatgggagatccttcaattgcttcaacaagtgaatgtgatatgtcatctcccctcttaagtt 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  3811999 tgtgaagaagcatagttttctgagaatatgaccaatgaaatgggagatccttccattgcttctacaagtgaatgtgatatgtcatctcccctcttaagtt 3812098  T
Q  101 tctcatcaacaaaggcatttatttgctttccaggaaaagccttagtcaaatggctaagaaagtggcggcggatgtcctcgcccctaaagcttacaaaaac 200  Q
    ||||||||| |||||||||||||||||||| || |||||||| || ||||||||||||||||     |||||||||||||||||||||||||||||||||    
T  3812099 tctcatcaagaaaggcatttatttgctttcgagaaaaagcctcagccaaatggctaagaaagaacttgcggatgtcctcgcccctaaagcttacaaaaac 3812198  T

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Target: chr4; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 3821572 - 3821771
Alignment:
Q  1 tgtgaagaagcatagttttctgagaatatgaccgatgaaatgggagatccttcaattgcttcaacaagtgaatgtgatatgtcatctcccctcttaagtt 100  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||     
T  3821572 tgtgaagaagcatagttttttgagaatatgaccaatgaaatgggagatccttcaattgcttcaaaaagtgaatgtgatatgtcatctcccctcgtaagtg 3821671  T
Q  101 tctcatcaacaaaggcatttatttgctttccaggaaaagccttagtcaaatggctaagaaagtggcggcggatgtcctcgcccctaaagcttacaaaaac 200  Q
      |||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||  | ||||||| ||||||||||||||||||||||||||    
T  3821672 cgtcatcaacaaaggcatttatttgctttcgaggaaaagccttaaccaaatggctaagaaagctgtggcggatatcctcgcccctaaagcttacaaaaac 3821771  T

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Target: chr4; HSP #3
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 4011787 - 4011986
Alignment:
Q  1 tgtgaagaagcatagttttctgagaatatgaccgatgaaatgggagatccttcaattgcttcaacaagtgaatgtgatatgtcatctcccctcttaagtt 100  Q
    |||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4011787 tgtgaacaagcatagttttatgagaatatgaccaatgaaatgggagatccttcaattgcttcaacaagtgaatgtgacatgtcatctcccctcttaagtt 4011886  T
Q  101 tctcatcaacaaaggcatttatttgctttccaggaaaagccttagtcaaatggctaagaaagtggcggcggatgtcctcgcccctaaagcttacaaaaac 200  Q
    |||||||||||||||||||||||||||||| |||||||||  ||  |||||||| || |||   | |||||||||| || || |||||||||||||||||    
T  4011887 tctcatcaacaaaggcatttatttgctttcgaggaaaagcgataaccaaatggccaaaaaatccgtggcggatgtcttcacctctaaagcttacaaaaac 4011986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 2 - 200
Target Start/End: Complemental strand, 3953096 - 3952900
Alignment:
Q  2 gtgaagaagcatagttttctgagaatatgaccgatgaaatgggagatccttcaattgcttcaacaagtgaatgtgatatgtcatctcccctcttaagttt 101  Q
    |||||||||||||||||||||||||||||| | ||||||||   ||||||||||||||||||| || ||||||  |||||||||||||||||||||||||    
T  3953096 gtgaagaagcatagttttctgagaatatgatcaatgaaatgaacgatccttcaattgcttcaaaaattgaatg--atatgtcatctcccctcttaagttt 3952999  T
Q  102 ctcatcaacaaaggcatttatttgctttccaggaaaagccttagtcaaatggctaagaaagtggcggcggatgtcctcgcccctaaagcttacaaaaac 200  Q
     |||||||||||||||||||||||||||  |||||||||||||| |||||| | |||||||  | ||||||||||||| ||||||||||||||||||||    
T  3952998 gtcatcaacaaaggcatttatttgcttttgaggaaaagccttagccaaatgaccaagaaagccgtggcggatgtcctctcccctaaagcttacaaaaac 3952900  T

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Target: chr4; HSP #5
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 4003308 - 4003507
Alignment:
Q  1 tgtgaagaagcatagttttctgagaatatgaccgatgaaatgggagatccttcaattgcttcaacaagtgaatgtgatatgtcatctcccctcttaagtt 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||   ||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||    
T  4003308 tgtgaagaagcatagttttctgagaatatgaccaatgaaatgaatgatccttcaattgcttctacaagtgcatgtgatatatcatctcccctcttaagtt 4003407  T
Q  101 tctcatcaacaaaggcatttatttgctttccaggaaaagccttagtcaaatggctaagaaagtggcggcggatgtcctcgcccctaaagcttacaaaaac 200  Q
    | || |||||||||||||||||||| || | ||||||||| ||| ||||||||| ||||||   | | ||||||||||||||||||||||||||||||||    
T  4003408 tttcgtcaacaaaggcatttatttgtttacgaggaaaagctttaatcaaatggccaagaaatccgtgacggatgtcctcgcccctaaagcttacaaaaac 4003507  T

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Target: chr4; HSP #6
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 3 - 200
Target Start/End: Original strand, 4026546 - 4026743
Alignment:
Q  3 tgaagaagcatagttttctgagaatatgaccgatgaaatgggagatccttcaattgcttcaacaagtgaatgtgatatgtcatctcccctcttaagtttc 102  Q
    ||||||||||||||||||||||||||||| | ||||||||   |||||||| |||||||| ||||||||||  ||||||||||||||||||||||||||     
T  4026546 tgaagaagcatagttttctgagaatatgatcaatgaaatgaatgatccttctattgcttctacaagtgaattcgatatgtcatctcccctcttaagtttg 4026645  T
Q  103 tcatcaacaaaggcatttatttgctttccaggaaaagccttagtcaaatggctaagaaagtggcggcggatgtcctcgcccctaaagcttacaaaaac 200  Q
    |||||||||||||||||||||||||||| || ||||||||||| |||||||| |||||||  | ||||||||||||| ||||||||| |||| |||||    
T  4026646 tcatcaacaaaggcatttatttgctttcgagaaaaagccttagccaaatggccaagaaagccgtggcggatgtcctcacccctaaagtttacgaaaac 4026743  T

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Target: chr4; HSP #7
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 3916055 - 3915856
Alignment:
Q  1 tgtgaagaagcatagttttctgagaatatgaccgatgaaatgggagatccttcaattgcttcaacaagtgaatgtgatatgtcatctcccctcttaagtt 100  Q
    |||||| |||||||||||||||||||||||| | ||||||||   |||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||    
T  3916055 tgtgaacaagcatagttttctgagaatatgatcaatgaaatgaatgatccttcgattgcttcaccaagtgaatctgatatgtcatctcccctcttaagtt 3915956  T
Q  101 tctcatcaacaaaggcatttatttgctttccaggaaaagccttagtcaaatggctaagaaagtggcggcggatgtcctcgcccctaaagcttacaaaaac 200  Q
    | ||||||||||| |||||||||||||||  |  ||||||||||  ||||||||||||||||  ||  ||||| |||| ||| |||||||||||||||||    
T  3915955 tgtcatcaacaaaagcatttatttgcttttgacaaaaagccttaaccaaatggctaagaaagccgctacggatttccttgccactaaagcttacaaaaac 3915856  T

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Target: chr4; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 3927049 - 3926850
Alignment:
Q  1 tgtgaagaagcatagttttctgagaatatgaccgatgaaatgggagatccttcaattgcttcaacaagtgaatgtgatatgtcatctcccctcttaagtt 100  Q
    |||||| ||||||| |||||||| ||||||| | |  ||||||  |||||||  ||||||||||||||||||| |||||||||||||||||| | |||||    
T  3927049 tgtgaacaagcatatttttctgaaaatatgatcaacaaaatggatgatcctttgattgcttcaacaagtgaatctgatatgtcatctcccctgtgaagtt 3926950  T
Q  101 tctcatcaacaaaggcatttatttgctttccaggaaaagccttagtcaaatggctaagaaagtggcggcggatgtcctcgcccctaaagcttacaaaaac 200  Q
    | ||||||||||| |||||||||||||||  | |||||||||||  ||||||||||||||||  ||  || ||||||| ||| |||||||||||||||||    
T  3926949 tgtcatcaacaaaagcatttatttgcttttgaagaaaagccttaaccaaatggctaagaaagctgctacgaatgtccttgccactaaagcttacaaaaac 3926850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 4220810 - 4220939
Alignment:
Q  1 tgtgaagaagcatagttttctgagaatatgaccgatgaaatgggagatccttcaattgcttcaacaagtgaatgtgatatgtcatctcccctcttaagtt 100  Q
    |||||||||||||||||||| |||||||||||| |||||||||  |||||||||||||||||| |||||||||||||||||||||||||  |||||||||    
T  4220810 tgtgaagaagcatagttttcagagaatatgaccaatgaaatggatgatccttcaattgcttcaccaagtgaatgtgatatgtcatctcctttcttaagtt 4220909  T
Q  101 tctcatcaacaaaggcatttatttgctttc 130  Q
    | | ||||||||||  ||||||||| ||||    
T  4220910 tgtaatcaacaaagatatttatttgttttc 4220939  T

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Target: chr4; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 3988197 - 3988396
Alignment:
Q  1 tgtgaagaagcatagttttctgagaatatgaccgatgaaatgggagatccttcaattgcttcaacaagtgaatgtgatatgtcatctcccctcttaagtt 100  Q
    |||||||||| ||| |||| ||||||||||||| |||||||    || |||||||||||||||||||||||||||   || |||||||||||||||| |     
T  3988197 tgtgaagaagaataattttttgagaatatgaccaatgaaattaacgagccttcaattgcttcaacaagtgaatgtttgatttcatctcccctcttaatta 3988296  T
Q  101 tctcatcaacaaaggcatttatttgctttccaggaaaagccttagtcaaatggctaagaaagtggcggcggatgtcctcgcccctaaagcttacaaaaac 200  Q
    | |  || |||||| ||||||||| ||||  | |||||||||||  |||||||| |||||||  |   |||||||||| |||||||||||| ||||||||    
T  3988297 tgttgtctacaaagacatttattttcttttgacgaaaagccttaaccaaatggccaagaaagccgtctcggatgtccttgcccctaaagctcacaaaaac 3988396  T

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Target: chr4; HSP #11
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 2 - 161
Target Start/End: Original strand, 4019585 - 4019744
Alignment:
Q  2 gtgaagaagcatagttttctgagaatatgaccgatgaaatgggagatccttcaattgcttcaacaagtgaatgtgatatgtcatctcccctcttaagttt 101  Q
    ||||||||||||||| || ||||||||||| | | |||||    |||||||||||| ||   |||||||| |||  ||| ||||||||||||||||| |     
T  4019585 gtgaagaagcatagtcttgtgagaatatgatcaaggaaattaatgatccttcaattcctctgacaagtgattgtagtatttcatctcccctcttaagctc 4019684  T
Q  102 ctcatcaacaaaggcatttatttgctttccaggaaaagccttagtcaaatggctaagaaa 161  Q
     |||||||||||||| ||||||| ||||| | | ||||||| | ||||||||||||||||    
T  4019685 atcatcaacaaaggcttttattttctttcgacgtaaagcctcaatcaaatggctaagaaa 4019744  T

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Target: chr4; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 46 - 200
Target Start/End: Complemental strand, 3962446 - 3962292
Alignment:
Q  46 gatccttcaattgcttcaacaagtgaatgtgatatgtcatctcccctcttaagtttctcatcaacaaaggcatttatttgctttccaggaaaagccttag 145  Q
    |||||||||||||||   |||||||| |||| ||| |||||||||||||||||||| ||||| |||||||| ||||||| ||||| |  |||| ||| |     
T  3962446 gatccttcaattgctctgacaagtgattgtggtatttcatctcccctcttaagtttatcatctacaaaggcttttattttctttcgatcaaaatcctcaa 3962347  T
Q  146 tcaaatggctaagaaagtggcggcggatgtcctcgcccctaaagcttacaaaaac 200  Q
    ||||||| |||||||| |    ||||||||| ||||| | |||||| ||||||||    
T  3962346 tcaaatgactaagaaaattcgcgcggatgtcttcgccgcgaaagctaacaaaaac 3962292  T

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Target: chr4; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 3 - 130
Target Start/End: Original strand, 3792676 - 3792803
Alignment:
Q  3 tgaagaagcatagttttctgagaatatgaccgatgaaatgggagatccttcaattgcttcaacaagtgaatgtgatatgtcatctcccctcttaagtttc 102  Q
    |||||||||||||| || ||||||||||| | | |||||    ||||||||| || ||   |||||||| |||| ||| |||||||||||||||||||      
T  3792676 tgaagaagcatagtcttgtgagaatatgatcaaggaaattaatgatccttcatttcctcttacaagtgattgtggtatttcatctcccctcttaagttca 3792775  T
Q  103 tcatcaacaaaggcatttatttgctttc 130  Q
    |||||||||||||| ||||||| |||||    
T  3792776 tcatcaacaaaggcttttatttcctttc 3792803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 129
Target Start/End: Original strand, 3825829 - 3825955
Alignment:
Q  3 tgaagaagcatagttttctgagaatatgaccgatgaaatgggagatccttcaattgcttcaacaagtgaatgtgatatgtcatctcccctcttaagtttc 102  Q
    |||||||||||||| || ||||||||||| | | |||||    ||||||||| || ||   |||||||| |||| ||| |||||||||||||||||||      
T  3825829 tgaagaagcatagtcttgtgagaatatgatcaaggaaattaatgatccttcatttcctcttacaagtgattgtggtatttcatctcccctcttaagttca 3825928  T
Q  103 tcatcaacaaaggcatttatttgcttt 129  Q
    |||||||||||||| ||||||| ||||    
T  3825929 tcatcaacaaaggcttttatttccttt 3825955  T

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Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 107
Target Start/End: Complemental strand, 4318299 - 4318238
Alignment:
Q  46 gatccttcaattgcttcaacaagtgaatgtgatatgtcatctcccctcttaagtttctcatc 107  Q
    ||||||| |||||||||||||| |||||||||||| ||||| ||||||||||| || |||||    
T  4318299 gatcctttaattgcttcaacaaatgaatgtgatatttcatcccccctcttaagcttgtcatc 4318238  T

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Target: chr5 (Bit Score: 107; Significance: 8e-54; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 2 - 200
Target Start/End: Original strand, 13399150 - 13399348
Alignment:
Q  2 gtgaagaagcatagttttctgagaatatgaccgatgaaatgggagatccttcaattgcttcaacaagtgaatgtgatatgtcatctcccctcttaagttt 101  Q
    |||||||||||||||||||||||||||||| | |||||||    |||||||| |||||||||| |||||||||||||||||||| |||||||||||||||    
T  13399150 gtgaagaagcatagttttctgagaatatgatcaatgaaataaatgatccttcgattgcttcaaaaagtgaatgtgatatgtcatttcccctcttaagttt 13399249  T
Q  102 ctcatcaacaaaggcatttatttgctttccaggaaaagccttagtcaaatggctaagaaagtggcggcggatgtcctcgcccctaaagcttacaaaaac 200  Q
     || ||||||||| ||||||||||||||  || ||||||||||  |||||||| |||||||  | || |||||||||| ||||||||||||||||||||    
T  13399250 gtcgtcaacaaagacatttatttgcttttgagaaaaagccttaaacaaatggccaagaaagccgtggtggatgtcctcacccctaaagcttacaaaaac 13399348  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 85
Target Start/End: Original strand, 7069956 - 7070038
Alignment:
Q  3 tgaagaagcatagttttctgagaatatgaccgatgaaatgggagatccttcaattgcttcaacaagtgaatgtgatatgtcat 85  Q
    |||||||||||||||||  |||||||||||  ||||||| | ||||  |||||||||||||| |||||| |||||||| ||||    
T  7069956 tgaagaagcatagttttgagagaatatgactaatgaaattgaagatgtttcaattgcttcaaaaagtgactgtgatatttcat 7070038  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 86
Target Start/End: Original strand, 7087022 - 7087105
Alignment:
Q  3 tgaagaagcatagttttctgagaatatgaccgatgaaatgggagatccttcaattgcttcaacaagtgaatgtgatatgtcatc 86  Q
    |||||||||||||||||  |||||||||||  ||||||| | ||||  |||||| ||||||| |||||| |||| ||| |||||    
T  7087022 tgaagaagcatagttttgagagaatatgactaatgaaattgaagatgtttcaatagcttcaaaaagtgattgtgctatttcatc 7087105  T

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