View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9712_high_16 (Length: 243)
Name: NF9712_high_16
Description: NF9712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9712_high_16 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 6936984 - 6937202
Alignment:
| Q |
18 |
acaagttgcgaaacttgatcatcacgaggcacctttaagagattgcagctggcatcctttctatccaatgctgatatcttcagcttgggatggtgacatt |
117 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6936984 |
acaagttgcgaaacttgatcatcatgaagcacctttaagagattgcagctggcatcctttctatccaatgctgatatcttcagcttgggatggtgacatt |
6937083 |
T |
|
| Q |
118 |
gttaggtgggaatttcctggaaatggtcaacctcctgctcctcctccaaatagaagatccactggagttcgtattagaggtttgtattatatgtagtttc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6937084 |
gttaggtgggaatttcctggaaatggtcaacctcctgctcctcctccaaatagaagatccactggagttcgtattagaggtttgtattatatgtagtttc |
6937183 |
T |
|
| Q |
218 |
tttgtacatattcatctct |
236 |
Q |
| |
|
|||||||||||| |||||| |
|
|
| T |
6937184 |
tttgtacatatttatctct |
6937202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University