View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9712_high_18 (Length: 242)
Name: NF9712_high_18
Description: NF9712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9712_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 33769041 - 33768816
Alignment:
| Q |
1 |
ttcaaacttgttattctccaaatgcctttattcaacaatgatcaagaaaaaggggagtaataaatcaggtcattgtagtaaatttaagaaatctaacaac |
100 |
Q |
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| T |
33769041 |
ttcaaacttgttattctccaaatgcctttattcaacaatgatcaagaaaaaggggagtaataaatcaggtcattgtagtaaatttaagaaatctaacaac |
33768942 |
T |
|
| Q |
101 |
aaaataatgcaaggt-ggtccatctagtgaggtacatacaaagtttctaactccttcaatccactcaagtcagggatagtgcctgtgagtttgtttccgc |
199 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33768941 |
aaaataatgcaaggtgggtccatctagtgaggtacatacaaagtttctaactccttcaatccactcaagtcagggatagtgcctgtgagtttgtttccgc |
33768842 |
T |
|
| Q |
200 |
caagccacctgtaataaattaatatt |
225 |
Q |
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|||||||||||||||||||||||||| |
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| T |
33768841 |
caagccacctgtaataaattaatatt |
33768816 |
T |
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