View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9712_high_2 (Length: 491)
Name: NF9712_high_2
Description: NF9712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9712_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 19 - 481
Target Start/End: Original strand, 51898902 - 51899369
Alignment:
| Q |
19 |
agtttctgtaaagagttcagatcatcatcatccactgttttgaataaaacagaacaccctataattctcatgagtcgaagaattcgtcggagtttggatt |
118 |
Q |
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| T |
51898902 |
agtttctgtaaagagttcagatcatcatcatccactgttttgaataaaacagaacaccctatcattctcatgagtcgaagaattcgtcggagtttggatt |
51899001 |
T |
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| Q |
119 |
gccctagaccgcctcttcgatcaaactcaaccggagttcttcctgctgttgatggtgttcgttcttcttct---tcgttgattcgatcagatagttgctt |
215 |
Q |
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| T |
51899002 |
gccctagaccgcctcttcgatcaaactcaaccggagttcttcctgctgttgatggtgttcgttcttcttcttcgtcgttgattcgatcagatagttgctt |
51899101 |
T |
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| Q |
216 |
ctcatcaatatctggttaagttctttagtttagactctttttgcagttggaggtaatgctaagcatgaaatgaaaactgaaacatagaaatgtta--nnn |
313 |
Q |
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| T |
51899102 |
ctcatcaatatctggttaagttctttagtttagactctttttgtagttggaggtaaagctaagcatgaaatgaaaactgaaacatagaaatgttattttt |
51899201 |
T |
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| Q |
314 |
nnnnctctgactgtgactaatgttgaaattgaaaaaggtctctttctctttatgttttgattgattcatgatggatctgtaatcagtttccatgtgtttc |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
51899202 |
ttttctctgactgtgactaatgttgaaattgaaaaaggtctctttctctttatgttttgattgattcatgatggatctgtaatcagtttccatgtttttc |
51899301 |
T |
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| Q |
414 |
actgttttagaattttaatgaggccagtctgatattaataactttagtgttagactttttcccctatg |
481 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51899302 |
actgttttagaattttcatgaggccagtctgatattaataactttagtgttagactttttcccctatg |
51899369 |
T |
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