View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9712_high_6 (Length: 446)

Name: NF9712_high_6
Description: NF9712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9712_high_6
NF9712_high_6
[»] chr2 (1 HSPs)
chr2 (1-410)||(16642801-16643205)


Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 410
Target Start/End: Complemental strand, 16643205 - 16642801
Alignment:
Q  1 aaatgaatcatcaaccacattttagataagatatagtttataaactatattttgataatgctgactaggttgagtttcacatgtacaacatatatattct 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  16643205 aaatgaatcatcaaccacattttagataagatatagtttatatactatattttgagaatgctgactaggttgagtttcacatgtacaacatatatattct 16643106  T
Q  101 tcattgaagagcattacacgtagtgnnnnnnnnngataaaatgaaggaaatggaaaccaagaataattgggagggttggaaacatgattctctt------ 194  Q
    ||||||||||||||||||| |||||         |||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||          
T  16643105 tcattgaagagcattacacatagtgttttgttttgataaaatgaaggaaagggaaaccaagtataattaggagggttggaaacatgattctcttaaaaaa 16643006  T
Q  195 nnnnnnnnntgtaaattgatttatgaagttgcttatttgaggggtagctcaatctcttttaaaagagagaaaatcataggttagtgttgtacccgtgcat 294  Q
             | ||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||| |||||||||||||||| |||||||||       
T  16643005 aaaaaaatatctaaattgatttatgaagttgcttatttgaggggtagctcaatcacttttaaaa-aaagagaatcataggttagtgtcgtacccgtg--- 16642910  T
Q  295 ccatatacatgcacgagtatctcactaacaattattctatcgttgtcaatcgactataatatcatactaaagtagtgaatctccatacttatttcccttc 394  Q
           |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| | |||||||||| |||||||||||||||||    
T  16642909 -------catgcacgagtatctcactaacaattattctatcattgtcaatcaactataatatcatactatattagtgaatcttcatacttatttcccttc 16642817  T
Q  395 ttcttttcttcattaa 410  Q
    |||||| |||| ||||    
T  16642816 ttctttccttcgttaa 16642801  T

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