View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9712_low_1 (Length: 652)
Name: NF9712_low_1
Description: NF9712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9712_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 159 - 642
Target Start/End: Original strand, 16814226 - 16814708
Alignment:
| Q |
159 |
ctttgtcagaacatgtactttggtcttttgtttggttggtcaaactagtatgggtcaggttcttgcaactctgcgccgtcgtcagcagagacatcttgtt |
258 |
Q |
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| T |
16814226 |
ctttgtcagaacatgtactttggtcttttgtttggttggtcaaactagtatgggtcaggttcttacaactgtgcaccgtcgtcagcagatacatcttgtt |
16814325 |
T |
|
| Q |
259 |
tgattgttgttctttaacaacggtttgatctcttttctgatgaccatttgtttcccgttccgaaatggcaaaccgttgttacaacatcgtctatggcggc |
358 |
Q |
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|||||||||||||| |||||||||| ||||||||||||||||| ||||| || ||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
16814326 |
tgattgttgttcttgaacaacggtt-gatctcttttctgatgagcattttttccccgttctgaaatggcaaaccgttgttacaacatcgtctatggcggc |
16814424 |
T |
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| Q |
359 |
ggttgtccaaggttgtcttataaacccgatgttgctccccatcctcaacatcagggtcggttctttctctgaaggcatagtccagaatctgcctcttctt |
458 |
Q |
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||| ||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
16814425 |
ggtcgtccacagttgtcttataaacccgttgttgctctccatcctcaacatcagggtcggttctttctctgaaggcatagtccagaatctgccttttctt |
16814524 |
T |
|
| Q |
459 |
ggtggaggatgctggtttctgtggattaaaacattggttgttataggccgtaaaatgttattctattcgccgatgtatgtgttcgaatacccttttacag |
558 |
Q |
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||||| |||||||||||||||| ||| ||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
16814525 |
ggtggtggatgctggtttctgttgatcaaaacattggttgttataggctgtaaaatgttgttctattccccgatgtatgtgttcgaatacccttttacag |
16814624 |
T |
|
| Q |
559 |
gtttgatttctcaaaatatgcgtttcacgcatggttatgctcccccaagatcatcgttagtgtggttgttattgtctctgcttc |
642 |
Q |
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|||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||| ||| | |||||| |
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| T |
16814625 |
gtttgatttctcaaaatatgcgtttcacgcatggttctgttcccccaagatcattgttagtgtggttgttagtgtatgtgcttc |
16814708 |
T |
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